Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08080 262 / 2e-87 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT4G20990 252 / 9e-84 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08065 229 / 2e-74 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT2G28210 214 / 2e-69 ATACA2 alpha carbonic anhydrase 2 (.1) AT4G21000 210 / 4e-67 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G04180 197 / 3e-62 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT5G56330 171 / 4e-51 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1) AT3G52720 152 / 2e-44 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014412 [exp] 487 / 7e-176 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 271 / 6e-90 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10016104 [exp] 267 / 3e-89 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021455 [exp] 264 / 3e-88 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 256 / 5e-85 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018034 [exp] 239 / 6e-78 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021454 [exp] 228 / 3e-74 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018017 [exp] 228 / 5e-73 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021456 [exp] 217 / 2e-70 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121900 [exp] 330 / 2e-114 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 275 / 1e-92 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 270 / 2e-90 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 261 / 4e-87 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 246 / 7e-81 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 240 / 1e-78 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G212900 [exp] 176 / 7e-54 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 172 / 4e-52 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10023915 pacid=23160661 polypeptide=Lus10023915 locus=Lus10023915.g ID=Lus10023915.BGIv1.0 annot-version=v1.0 ATGAAACCCTCTCAAGCTTCCACCTTTTCCTTCTTCTTCCTCTTGGCCGCTCTTGTTCTTCTTCTGCTGCTTTCCTCACTCGTCACTGCACAAGAAGTTG AGGATGAGAGAGAGTTTGACTACATTAGAGGAAGCGGAAAGGGTCCCGACAAATGGGGGGAGCTTAAGAATGATTGGGGAGCTTGCAGAACAGGACAACT TCAGTCCCCCATTGATATGTCGGATCAAAGAGTGAAGCTTCTCAATAGATCTCTTGATATCAACCGCCACTACAAGCCTGCAAACTCCACTGTCAAAAAC CGTGGGCATGACATCTCTCTTCAATGGAAAGGGTCTGATGCTGGATTGATAAGGATCAATGGGACGGAGTATTTGCTTCAGCAATGTCACTGGCATTCTC CTTCTGAGCATACCATCAATGGCAGGAGGTTTGATATGGAGCTACACATGGTGCATTTGAATCCAGAAAGTAAGAAAATTGCTGTTACTGGAGTCTTGTA CAGGGCTGGCAGTAAGCCTTGTGACTTCCTGTCCAAATTGATCAAGGATATTAAGTCAATTGAACACGACGAGATGGATAAGAACAACAACGAAAAGAAA GAGCTGGAGAAAGACATGGGAGTTATTGATCCTAAAGATATCAGAATGGGAGGCAAGAAGTATTACAGATACATCGGTTCACTCACTGTTCCTCCTTGCA CTGAAGGAGTCATTTGGACTATAAACCGAAAGATAAAGACTGTTTCCAGAGACCAGATCAAAGCTCTTAGGGATGCTGTGCATGATTATGCAGAGAAAAA TGCAAGGCCAGTTCAAGAACTCCATCAACGAGAAGTCCAACTTTACGAACCAAACCAAACTTCCAATTAG
AA sequence Show only first row Show all	>Lus10023915 pacid=23160661 polypeptide=Lus10023915 locus=Lus10023915.g ID=Lus10023915.BGIv1.0 annot-version=v1.0 MKPSQASTFSFFFLLAALVLLLLLSSLVTAQEVEDEREFDYIRGSGKGPDKWGELKNDWGACRTGQLQSPIDMSDQRVKLLNRSLDINRHYKPANSTVKN RGHDISLQWKGSDAGLIRINGTEYLLQQCHWHSPSEHTINGRRFDMELHMVHLNPESKKIAVTGVLYRAGSKPCDFLSKLIKDIKSIEHDEMDKNNNEKK ELEKDMGVIDPKDIRMGGKKYYRYIGSLTVPPCTEGVIWTINRKIKTVSRDQIKALRDAVHDYAEKNARPVQELHQREVQLYEPNQTSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10023915 [exp]	0	1
					Lus10005391 [exp]	2.0	0.8782
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	5.1	0.8292
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	6.5	0.8252
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	7.7	0.8203
AT1G67980		CCOAMT	caffeoyl-CoA 3-O-methyltransfe...		Lus10034584 [exp]	11.0	0.7406
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	12.7	0.8150
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	15.1	0.7976
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	20.5	0.8118
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	21.0	0.7973
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	21.8	0.8151

Compare expression of checked genes

Lus10023915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.