Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16580 343 / 8e-115 Protein phosphatase 2C family protein (.1) AT5G66720 328 / 2e-109 Protein phosphatase 2C family protein (.1.2) AT4G33500 159 / 7e-43 Protein phosphatase 2C family protein (.1) AT2G30170 135 / 1e-36 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014413 [exp] 656 / 0 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 319 / 2e-106 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10016309 [exp] 322 / 8e-106 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 137 / 4e-38 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2) Lus10031355 [exp] 122 / 2e-31 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 121 / 3e-31 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028900 [exp] 393 / 5e-135 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.005G125700 [exp] 380 / 9e-130 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.014G042800 [exp] 345 / 1e-114 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 160 / 6e-46 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 143 / 5e-40 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 142 / 3e-38 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 128 / 2e-34 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 112 / 2e-29 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.001G282500 [exp] 110 / 3e-27 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF07228 [flax] [poplar] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Lus10023916 pacid=23160722 polypeptide=Lus10023916 locus=Lus10023916.g ID=Lus10023916.BGIv1.0 annot-version=v1.0 ATGCGATTTGGGGTATTGTCCAAAGTCAGTTTTGGAATTAGGCAGCAGGCGGTTATTCCTAGGAATTCCGCTTGCTTTTCACCTACTCTCGCCGCTTGTT CTCCGCCGGCCAGTAGTAGTAGTAGAGGAGTAACAACAATGGCTGCTCCTGGTTCCAAGACGGTTTTTGGAGGGGATGTGTATACGGATGCTAGCTGTGG TGGGACTGGAGGAGGAGGGATGGAGCTATTCAAGCCTAGTGGAGTCTTCTTTGCCGATTCAGGGCGTGTTAGTTGCTGCTTGAAAGCCAGTGTTAAGATG GTTAAGAGAGAGTTCCCTCCAGGTAGCAGGTTGGTCTGTGGCAACTTCTTGTTCAGGAGGAAGAACAATCTAGGTGTTGTTGGGCAGCCATTGTTGAAGC ACTTGCACACTTGTGCTGCCTCCATTGGTCCTGCTCCGGATTTGTCGAATGAAGAACAGGCAGCTGTTTCTACCATGAAACTGAAGCTGGATTCGGGATC GAGTTACTTGCCACATCCTGACAAGGAAGCGACAGGTGGAGAGGATGCTCATTTCATATGCGGAGCTGAACAAGCTATTGGTGTGGCTGATGGTGTAGGT GGATGGGCAGATGTTGGGGTTAATGCCGGTTTGTTTGCTCAGGAACTTATGCGTAACTCGGTGATGGCCATTCAGGACGAGTCTAAAAGGTCGGTTGATC CTGCCAAGGTCTTGGAGATAGCTCATTCCAACACCAAATCGAAAGGCTCCTCCACTGCTTGCATCATAGCTCTCACGAATGAGGGATTGCTTGCTATCAA TCTCGGCGACAGCGGATTCATAGTGATCAGAGATGGATCGACAGTGTTCCGATCGCCAGTTCAACAGCATGGCTTCAATTTCCCCTGCCAATTGGCGTGT GGTGATGGCGGTGACCTTCCAAGCGCAGGCCAGGTATTCAAAGTTCCAGTCACGCCTGGAGACGTTGTGATCACTGGAACAGACGGGCTATTCGACAACG TATACAGCAGCGAGATTACTTCCATCGTCGTGAATTCCCTAAGGACAAACGTGGGGCCTCAAGAGACTGCACAGAAGATTGTGGTTTTAGCGAGAGAACA TGCGATGGACAGAAACAGGCCGTCGCCATTCGCTGTTGCAGCTCAAGATGCTGGGTACCGCTACTATGGTGGCAAGCTTGATGACATCACTGTTGTTGTC TCGTACATTACAAACTCCATTTGA
AA sequence Show only first row Show all	>Lus10023916 pacid=23160722 polypeptide=Lus10023916 locus=Lus10023916.g ID=Lus10023916.BGIv1.0 annot-version=v1.0 MRFGVLSKVSFGIRQQAVIPRNSACFSPTLAACSPPASSSSRGVTTMAAPGSKTVFGGDVYTDASCGGTGGGGMELFKPSGVFFADSGRVSCCLKASVKM VKREFPPGSRLVCGNFLFRRKNNLGVVGQPLLKHLHTCAASIGPAPDLSNEEQAAVSTMKLKLDSGSSYLPHPDKEATGGEDAHFICGAEQAIGVADGVG GWADVGVNAGLFAQELMRNSVMAIQDESKRSVDPAKVLEIAHSNTKSKGSSTACIIALTNEGLLAINLGDSGFIVIRDGSTVFRSPVQQHGFNFPCQLAC GDGGDLPSAGQVFKVPVTPGDVVITGTDGLFDNVYSSEITSIVVNSLRTNVGPQETAQKIVVLAREHAMDRNRPSPFAVAAQDAGYRYYGGKLDDITVVV SYITNSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16580			Protein phosphatase 2C family ...		Lus10023916 [exp]	0	1
AT2G36835			unknown protein		Lus10023919 [exp]	8.1	0.7995
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	24.7	0.7270
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	44.7	0.7073
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10034326 [exp]	48.3	0.6411
AT4G21580			oxidoreductase, zinc-binding d...		Lus10018450 [exp]	74.2	0.6984

Compare expression of checked genes

Lus10023916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.