Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53190 653 / 0 Pectin lyase-like superfamily protein (.1) AT3G54920 521 / 0 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT5G04310 509 / 1e-177 Pectin lyase-like superfamily protein (.1) AT4G13710 494 / 8e-173 Pectin lyase-like superfamily protein (.1.2) AT5G63180 480 / 6e-168 Pectin lyase-like superfamily protein (.1) AT1G67750 478 / 2e-167 Pectate lyase family protein (.1) AT5G48900 476 / 3e-166 Pectin lyase-like superfamily protein (.1) AT4G24780 475 / 3e-166 Pectin lyase-like superfamily protein (.1.2) AT1G04680 476 / 5e-166 Pectin lyase-like superfamily protein (.1) AT4G13210 475 / 1e-165 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014414 [exp] 853 / 0 AT3G53190 703 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037945 [exp] 533 / 0 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10023542 [exp] 511 / 3e-179 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 496 / 6e-174 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 494 / 2e-173 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 494 / 6e-173 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10023679 [exp] 488 / 1e-170 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 481 / 2e-168 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 465 / 4e-162 AT1G67750 625 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122000 [exp] 720 / 0 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G229000 [exp] 564 / 0 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G032700 [exp] 540 / 0 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 491 / 6e-172 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 489 / 3e-171 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 485 / 3e-170 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 483 / 4e-169 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 482 / 1e-168 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 479 / 7e-168 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.002G238800 [exp] 477 / 2e-166 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10023917 pacid=23160679 polypeptide=Lus10023917 locus=Lus10023917.g ID=Lus10023917.BGIv1.0 annot-version=v1.0 ATGTTGCAAATCACCAGCATTGTCCTGGTTTTGCTCCTTAGCTCCTTCACAGAACTCGGATGGGCAATGCAGCTCAACCTCACTTTCCCATCTCCTCACC CTGACCCAGAGTTCGTAGCTCAAGAAGTTCAAAGGAGAGTGAATGCTTCAATCTCAAGAAGGAAGACCCTCCAGATATCCCAGAAAGACGAATCCGCTTG CTTCACTGGGAACCCAATCGACGACTGCTGGAAATGCGACCCGGACTGGCCAAACAACCGCCAAAGGCTGGCAGATTGCGCCATCGGGTTCGGGCAGTAC GCAATGGGAGGCAAGAACGGTGTGTATTACATAGTCACCGACTCCTCAGACGATGATGCTGTGAATCCCAAGCCTGGAACGCTGAGATACGCAGTGATAC AGGAAGAACCACTGTGGATTGTGTTCCCTAGCAACATGCTCATCAAGCTGAAGCAGGAACTCATCTTCAATAGCTTCAAAACCCTGGACGGACGTGGCGC AAATGTCCACATAGAAGGCGGCGGCTGCATAGAAGGCGGCGGCTGCATTACCCTGCAGTACATTAGCAATGTCATCATCCATACCATCCACATTCACCAT TGTGTTCCTTCAGGAAACACGAATGTGAGGTCAAGCCCAACGCATTACGGCTACAGGACTAAATCAGACGGAGACGGAATCTCAATCTTCGGAGCAAAGG ACATATGGATTGACCATTGTACGTTGTCTCACTGTACCGACGGACTAATCGACGCCGTGATGGGAGCCACAGGGATCACGATCTCAAACAACTACTTCTC CCACCACAACGAGGTAATGCTTTTGGGCCACAGCGACGATTACTCGCCCGACACAGGGATGCAGGTCACAATCGCGTTCAATCACTTCGGCGAACAGCTC GTCCAGCGGATGCCTCGCTGCCGGCGAGGGTACATCCACGTCGTGAACAACGACTTCACGGAGTGGGAGATGTACGCGATCGGTGGTAGCGGGCATCCGA CGATCAACAGCCAGGGGAATCGCTACGTCGCTCCTTCGAACCCTAATGCAAAAGAGGTGACGAAGAGGCTGGACTCCGGCGACGGAGAATGGAAGGGGTG GAACTGGAGGTCGGAAGGGGATATAATGGTGAACGGAGCTTTCTTTGTGTCGTCGGGGGAGGAGTTGGAGGTGAAGTATGAGAAGGCTTACAGTGTGGAG CCCAAGTCCGTCGATCTTATCGGCATGCTTACTCTCCACGCCGGCGCTCTTGGAGTTGGTGGCAGGGAAAACAACTTGGGAATGTGGAGCACTGGGCCCA ATGGCGGCACACCCGGGTTAGGCTCCAGCGACGACTACTCCGACGACTATGCAGCCAGCGGCGGAGTTGCTCCGCTAACGTCGCCGTCGCTTCTGACGTT TGTAGTAGCGATCTTGTGCTTCATTTCTTGCGACACTATTGCCGCCTTCACCTCCATGCCATAG
AA sequence Show only first row Show all	>Lus10023917 pacid=23160679 polypeptide=Lus10023917 locus=Lus10023917.g ID=Lus10023917.BGIv1.0 annot-version=v1.0 MLQITSIVLVLLLSSFTELGWAMQLNLTFPSPHPDPEFVAQEVQRRVNASISRRKTLQISQKDESACFTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQY AMGGKNGVYYIVTDSSDDDAVNPKPGTLRYAVIQEEPLWIVFPSNMLIKLKQELIFNSFKTLDGRGANVHIEGGGCIEGGGCITLQYISNVIIHTIHIHH CVPSGNTNVRSSPTHYGYRTKSDGDGISIFGAKDIWIDHCTLSHCTDGLIDAVMGATGITISNNYFSHHNEVMLLGHSDDYSPDTGMQVTIAFNHFGEQL VQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGHPTINSQGNRYVAPSNPNAKEVTKRLDSGDGEWKGWNWRSEGDIMVNGAFFVSSGEELEVKYEKAYSVE PKSVDLIGMLTLHAGALGVGGRENNLGMWSTGPNGGTPGLGSSDDYSDDYAASGGVAPLTSPSLLTFVVAILCFISCDTIAAFTSMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53190			Pectin lyase-like superfamily ...		Lus10023917 [exp]	0	1
AT3G53190			Pectin lyase-like superfamily ...		Lus10014414 [exp]	1.0	0.9133
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	21.0	0.9038
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10038189 [exp]	26.2	0.8514
AT4G27660			unknown protein		Lus10032928 [exp]	27.6	0.8920
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	31.5	0.8818
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	33.6	0.8897
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032098 [exp]	35.7	0.8845
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	36.9	0.8873
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	43.1	0.8779
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	43.8	0.8826

Compare expression of checked genes

Lus10023917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.