Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 501 / 1e-177 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 377 / 1e-128 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G69040 50 / 2e-06 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 46 / 4e-05 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 45 / 6e-05 ACR6 ACT domain repeat 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014418 [exp] 755 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10017470 [exp] 490 / 4e-173 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 377 / 3e-128 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 361 / 2e-122 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 358 / 5e-121 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 287 / 8e-94 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 284 / 1e-93 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10019191 [exp] 52 / 3e-07 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 50 / 2e-06 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442600 [exp] 584 / 0 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 580 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G228500 [exp] 496 / 1e-175 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 485 / 3e-171 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G237100 [exp] 394 / 3e-135 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 369 / 2e-125 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 358 / 3e-121 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.003G116600 [exp] 52 / 5e-07 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 48 / 8e-06 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.T124144 [exp] 44 / 0.0002 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023921 pacid=23160756 polypeptide=Lus10023921 locus=Lus10023921.g ID=Lus10023921.BGIv1.0 annot-version=v1.0 ATGGGTATTCTCCACGACGACGTCGTACTGGTGACCCAACCGGAGAGACAAGACGACCCAACAATCATCACAGTCAACTGTCCCGACAAGACAGGTCTGG GCTGCGACCTTTGTCGTATCATCCTCTTCTTCGGCCTTAACATTGTTAGAGGAGATGTTTCCACGGACGGGAAGTGGTGCTACATAGTGTTTTGGGTGGT GGGCGCCGGGGAGATACGGTGGTCGTTGTTGAAGAAGAGGTTGATTGAAGCTTGTCCTTCTTGTTCTTCTGCTTCTGGGATTTCATTCTACAGCGCTGAG TTGCAGAAGAAGATTCCTGATGTATTTCTTCTTAAGCTCTGCTGCTTTGACCGAACAGGGCTTCTCCATGATGTGACTGGGAAGCTATGCGAGCTTGAGC TGGCCATAAAGAAGGTGAAGGTGTCAACAACTCCTGATGGGAAAGTTATGGACCTATTCTTCATTACTGATACCAGGGAGCTTCTGCACACGAGGGAAAG AAGGGAAGAAACATACGGTTATCTGAAAGCCGCGATAGGAGAAGCCATGATAAGCTGCGACATAGAAATGGTCGGTCCAGAAATCACAGCATGCTCTCAG GAGTCCTCTTTCCTTCCTCATTCCATGACAGATGACCTTCCTCAGCTGGATTTAGCAGCAGCTGAAATCCCAACTTCACTAACTTCCACAGGTGTTTCTG TGACCATGGACAACTCACTGAGTCCCGGTCACACCCTCGTCCAAATCATGTGCCAGGATCACAAAGGCCTTCTCTACGACATCATGCGAACCCTAAAAGA TTGCGGTATACAGATTTCCTATGGGAGGTTCTCCACAAAACAAGGGAGGAACTGTGAGATAGACCTTTTCATTGTGCAAACCAATGGCAACAAGATAGTT GATCCGAGCAAGCAGAAGGGGTTGGCCTCACGTCTCGAATCAGAACTTCGTCGTCCACTTCGTGTGGCTCTTGTGAGCCGGGGTCCTGATACCGAGCTAA TAGTAGCTAACCCTGTTGAACTATCTGGGAAAGGAAGGCCTCTAGTGTTCTATGATATCACCCTTGCTCTCAAGTTACTTGACACTTGCATCTTTTTGGC TGAGATTCAAAGGAGAATGATCGGGGATCGCGAATTCGAAGTGTATAGAGTATTGCTGGACGAAGGGGAAGGGTTGTCAGTTCCAAGAAGCAGGATTGAG GAAGGAGTTTGGAGGATGCTAATGGGCTGGGAGTGA
AA sequence Show only first row Show all	>Lus10023921 pacid=23160756 polypeptide=Lus10023921 locus=Lus10023921.g ID=Lus10023921.BGIv1.0 annot-version=v1.0 MGILHDDVVLVTQPERQDDPTIITVNCPDKTGLGCDLCRIILFFGLNIVRGDVSTDGKWCYIVFWVVGAGEIRWSLLKKRLIEACPSCSSASGISFYSAE LQKKIPDVFLLKLCCFDRTGLLHDVTGKLCELELAIKKVKVSTTPDGKVMDLFFITDTRELLHTRERREETYGYLKAAIGEAMISCDIEMVGPEITACSQ ESSFLPHSMTDDLPQLDLAAAEIPTSLTSTGVSVTMDNSLSPGHTLVQIMCQDHKGLLYDIMRTLKDCGIQISYGRFSTKQGRNCEIDLFIVQTNGNKIV DPSKQKGLASRLESELRRPLRVALVSRGPDTELIVANPVELSGKGRPLVFYDITLALKLLDTCIFLAEIQRRMIGDREFEVYRVLLDEGEGLSVPRSRIE EGVWRMLMGWE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	0	1
AT3G53490			unknown protein		Lus10015041 [exp]	1.0	0.9626
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	1.4	0.9504
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	4.2	0.9498
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	6.3	0.9473
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	6.3	0.9406
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	7.3	0.9471
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	7.5	0.9428
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10025337 [exp]	8.5	0.9150
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	8.8	0.9299
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	9.4	0.9497

Compare expression of checked genes

Lus10023921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.