Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03460 81 / 7e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014419 [exp] 114 / 2e-35 AT5G03460 59 / 1e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122600 [exp] 98 / 1e-28 AT5G03460 88 / 1e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023922 pacid=23160841 polypeptide=Lus10023922 locus=Lus10023922.g ID=Lus10023922.BGIv1.0 annot-version=v1.0 ATGTGCCTGTTGCCTCTGTTCTTGGTCCCGATCGTCAATCTTCTACCGCTAATCTTCGATTTGATCATGGTGAGGGGTTCAGTACACGGGAAAATATATG CGATGTTTGGATGGGAGTACAGGAAGCCGGAGAGAGCTCCTCCTGCTTGCCCATACAAGCCTGCCGCCAGTAAGGATGATGGCAGCAAAGTCGTGACAGA TGGCGAACTACCTATGGAACATCCACCAATCTCAAAACCTCTGGAAGCTGACAACAGTAAGGAAGACTAA
AA sequence Show only first row Show all	>Lus10023922 pacid=23160841 polypeptide=Lus10023922 locus=Lus10023922.g ID=Lus10023922.BGIv1.0 annot-version=v1.0 MCLLPLFLVPIVNLLPLIFDLIMVRGSVHGKIYAMFGWEYRKPERAPPACPYKPAASKDDGSKVVTDGELPMEHPPISKPLEADNSKED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03460			unknown protein		Lus10023922 [exp]	0	1
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	1.0	0.9169
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	2.6	0.8967
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	3.2	0.9129
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	5.3	0.9037
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10010536 [exp]	10.0	0.8851
AT4G19140			unknown protein		Lus10023813 [exp]	10.6	0.8949
AT5G35080			unknown protein		Lus10039972 [exp]	12.0	0.8878
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10005794 [exp]	13.4	0.8720
AT3G19460			Reticulon family protein (.1.2...		Lus10014102 [exp]	13.4	0.8935
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	14.1	0.9115

Compare expression of checked genes

Lus10023922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.