Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03455 175 / 3e-54 ACR2, ARATH;CDC25, CDC25 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014420 [exp] 502 / 1e-179 AT5G03455 199 / 2e-63 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10021515 [exp] 171 / 1e-52 AT5G03455 222 / 3e-76 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10022616 [exp] 170 / 2e-52 AT5G03455 220 / 3e-75 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122700 [exp] 174 / 4e-54 AT5G03455 218 / 2e-74 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.004G065500 [exp] 80 / 3e-17 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10023923 pacid=23160729 polypeptide=Lus10023923 locus=Lus10023923.g ID=Lus10023923.BGIv1.0 annot-version=v1.0 ATGGAGATCGGCGACGAAGCTTCTCATCCGGTAGTGTCTCGACGAAGCATCTCCTACATAACCAGCACTGAGCTCCTCTCTATCAAGGATCGACCCGGTC TCTCCGTGGTTGATGTCAGGGACGACGAGAGGATCGATGATGGACATATAGCAGGGTCGCTTCACTATGCGAGCAGTAGCTTCGGCGATAGGATGCCTGA TCTTCTTCAGGAGGTGAAAGGGGGAGATACGCTTGTTTTCCATTGCGCGCTGAGCCAGGTTCACGGCCCAAAATGTGCACGAAGGCTAGCGAATTATCTG GATGAACTGAAAGAAGAGACTCGGGTGAAAACGGTAATGGTACTAGAACGTAGCTTCAACGGCTGGGAGGCTGCTGGTAAACCTGTTTGCCACTGCGCTG AGGTTCCTTGCAAAGCTGAAAGCCGAATGAAACCGTCGTCATCGCACTCCAAGTTCTTCTCCTCTCTGAAGCAGGTGGAGAAAAGACTAAAGCTTGAATC AAACAGTGAACCGAAAGAAAGCCAACAATCTCCACGCCTACGTCCCTCGCTAAGCACGCCGATCAATCTATACTGTTCCGACGATCGTTCTGCCGGCGCC GCCGACAGCTCACTCAATCTCCAACAAGAAAGCAGCGAGCCGCCGTCAGCCTTTCTCTCATCTCCGTCAAAACCCCATGAAACCCCACTGCCAGAAACTC AAGCCGTCGCAGAGGAAGTTTTCTCATCATCGTCAGATGACGGTGATATCCATGTGTTGATGGAACTGTTGGGTTTGTCGGATTCAGATGAGAATAACAG TAACATTAATAATGATGAGATTGTTCGGGGAGATGAGTTTTTCGAGAGGAATCTGGGGGTGAAGAGCGAAGAAGAAGTGAGGAGATTGAATGGATGGGTT AAATGGCATATGAGAGATGGAGTTGCAGAGGATGAGGAGGAGCCATTCAGGTTGGCTCTTTTGCTGCTGGGTAAGGCTGCTTTGAAGTTAGAGAGTTGTG ATAATGGCGACTGCCTGGAGTTTCCTTCTGCCATTGATGAGTATTTGAAGGTCGATCCGCCGCCAAAGGATTGA
AA sequence Show only first row Show all	>Lus10023923 pacid=23160729 polypeptide=Lus10023923 locus=Lus10023923.g ID=Lus10023923.BGIv1.0 annot-version=v1.0 MEIGDEASHPVVSRRSISYITSTELLSIKDRPGLSVVDVRDDERIDDGHIAGSLHYASSSFGDRMPDLLQEVKGGDTLVFHCALSQVHGPKCARRLANYL DELKEETRVKTVMVLERSFNGWEAAGKPVCHCAEVPCKAESRMKPSSSHSKFFSSLKQVEKRLKLESNSEPKESQQSPRLRPSLSTPINLYCSDDRSAGA ADSSLNLQQESSEPPSAFLSSPSKPHETPLPETQAVAEEVFSSSSDDGDIHVLMELLGLSDSDENNSNINNDEIVRGDEFFERNLGVKSEEEVRRLNGWV KWHMRDGVAEDEEEPFRLALLLLGKAALKLESCDNGDCLEFPSAIDEYLKVDPPPKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10023923 [exp]	0	1
AT2G32760			unknown protein		Lus10037826 [exp]	6.6	0.8695
AT2G40110			Yippee family putative zinc-bi...		Lus10040190 [exp]	9.9	0.8853
					Lus10006087 [exp]	20.3	0.8739
AT4G27120			unknown protein		Lus10011161 [exp]	24.9	0.8702
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	28.1	0.8625
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	29.0	0.8476
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	31.0	0.8619
AT4G17360			Formyl transferase (.1)		Lus10007482 [exp]	31.5	0.7980
AT3G18215			Protein of unknown function, D...		Lus10009640 [exp]	34.2	0.8545
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	34.8	0.8663

Compare expression of checked genes

Lus10023923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.