Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03380 100 / 6e-24 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 99 / 3e-23 Heavy metal transport/detoxification superfamily protein (.1) AT5G60800 75 / 4e-15 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G50740 65 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 63 / 5e-11 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G02960 60 / 2e-10 Heavy metal transport/detoxification superfamily protein (.1) AT5G24580 59 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT4G38580 54 / 6e-09 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT4G35060 52 / 5e-08 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 52 / 7e-08 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014421 [exp] 253 / 4e-81 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 140 / 2e-38 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 136 / 1e-36 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10032245 [exp] 95 / 3e-24 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) Lus10021432 [exp] 82 / 9e-18 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 77 / 1e-15 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10012867 [exp] 69 / 1e-12 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10030514 [exp] 67 / 2e-12 AT5G50740 221 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10038785 [exp] 64 / 2e-11 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093100 [exp] 126 / 1e-33 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 123 / 3e-32 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 86 / 8e-19 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G214700 [exp] 79 / 3e-16 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006600 [exp] 65 / 7e-12 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 64 / 2e-11 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.015G099500 [exp] 63 / 4e-11 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 62 / 7e-11 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G017600 [exp] 61 / 8e-11 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.012G007300 [exp] 59 / 1e-09 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10023924 pacid=23160664 polypeptide=Lus10023924 locus=Lus10023924.g ID=Lus10023924.BGIv1.0 annot-version=v1.0 ATGGATATGCATTGTGAAGGCTGTGCAAAAAAGATCCGCCGCGCTGTAAAGCACATGGACGGCGTGGAGGATGCGAGGACGGATTTCGCGTCGAACAAGC TGACGGTGACCGGTAAGGTCGATCCGGGGAAGGTGAAGGCTAGGGTTGAGGAGAAAATCAAGAAGACGGTGGAGATTATCTCTCCTCAACCGAAAAAGGA AGGCGGTGGAGGCGGTGGTGCTCCGCCTGCTGCCGATAAGAAGGCCGAGAAGAAGCCGGCGGAGGAGGAGAAAAAGCCTGCGGCGGAGGAGAAGAAACCG GCTCCACCTAAAGAGAGTACCGTTGTGATGAAGATTAGAACTCATTGTGATGGTTGCATTACCAAGATGAAGAAGATCATAATGAAAATTAAAGGAGTTG ACAGCGTAGCAATTGACGGTGGTAAAGACTTGGAGAAGCTACGCCGTAACGTGGACGTGATCCCGCCGGCGAAGAAGGGCGATGACAAGAAAGAAGCCGC AGCCGGCGGCACGGAAAAGAAGGAGAAGGCCAAAGAGAGCGGCGGCCAGGAAGCCAAGGCCGAGAAGAAAGAAGGAGACGGCGGCGGAAAGAAAGCAGAG GCCGTCGCAGCTCCTCCCGCCGGCGGCGGAGGCGCGCCTAAGATGGAGATTAATAAAATGGAGTATCAAGGCTACTCGCAGGCGTCGTCGTCGTCGAACT ACTGGCACGACGGATCGTACGGTCAGAGCAGCTACTACGCGCAGCCACATCAGCAGCAATTTCACTACGGCATGGAGCCGCAGTACGGATACCAGCAGCC GCCGATGATGGTGATGAACCACGGCGGCGAAGGTGGCGGGTATGGTTACGCGCCACCGATGATGGACCACCGGTACGGGATGATGCCACCTCCCCACCCA GGCCACGCGCCTCAGTTCCTGAGCGACGAGAATCCCAACGCTTGTTCGATGATGTGA
AA sequence Show only first row Show all	>Lus10023924 pacid=23160664 polypeptide=Lus10023924 locus=Lus10023924.g ID=Lus10023924.BGIv1.0 annot-version=v1.0 MDMHCEGCAKKIRRAVKHMDGVEDARTDFASNKLTVTGKVDPGKVKARVEEKIKKTVEIISPQPKKEGGGGGGAPPAADKKAEKKPAEEEKKPAAEEKKP APPKESTVVMKIRTHCDGCITKMKKIIMKIKGVDSVAIDGGKDLEKLRRNVDVIPPAKKGDDKKEAAAGGTEKKEKAKESGGQEAKAEKKEGDGGGKKAE AVAAPPAGGGGAPKMEINKMEYQGYSQASSSSNYWHDGSYGQSSYYAQPHQQQFHYGMEPQYGYQQPPMMVMNHGGEGGGYGYAPPMMDHRYGMMPPPHP GHAPQFLSDENPNACSMM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	0	1
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	1.0	0.9642
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10026879 [exp]	2.0	0.9516
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	2.0	0.9557
AT3G43740			Leucine-rich repeat (LRR) fami...		Lus10002117 [exp]	3.2	0.9466
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	3.5	0.9482
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	4.0	0.9431
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	4.2	0.9523
AT2G32210			unknown protein		Lus10003815 [exp]	5.2	0.9467
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	5.7	0.9459
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	6.0	0.9424

Compare expression of checked genes

Lus10023924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.