Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46100 705 / 0 ATHRS1 Histidyl-tRNA synthetase 1 (.1) AT5G03406 356 / 2e-121 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G02760 139 / 6e-35 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014422 [exp] 929 / 0 AT3G46100 758 / 0.0 Histidyl-tRNA synthetase 1 (.1) Lus10041073 [exp] 132 / 1e-32 AT3G02760 973 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10030341 [exp] 132 / 1e-32 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124400 [exp] 722 / 0 AT3G46100 636 / 0.0 Histidyl-tRNA synthetase 1 (.1) Potri.019G071400 [exp] 129 / 1e-31 AT3G02760 879 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10023925 pacid=23160742 polypeptide=Lus10023925 locus=Lus10023925.g ID=Lus10023925.BGIv1.0 annot-version=v1.0 ATGCCTCCGATAACTTCCTCACTTCACGTCGTCAGTCCGCGCATCTTCCTCCGCCTGAAACCTTTCTTCACATCTCTTCATCAATTGTCTCCTTCGGCTA TTTCACCTCGTAAGTTCGTCGCGCCAATAATCAACCGTAGAGCTCGATTCTGCACGGTCGCCGCACGAGACAATGGCGGGAGGTCCGGAGCGATTTCAGG ACCTCCGGTGATGGAAGGAGAAGAAGCGGCGACGAAGATCGACGTGAATCCTCCTAAAGGCACGAGAGATTTCCCTCCCGAGGAAATGCGCCTCCGCAAT TGGCTTTTCTACAACTTCAAAGAGGTGTCGAGGTTGTATGGTTTTGAAGAGGTTGATTTCCCGGTGTTGGAGTCGGAGGCTTTGTTCATAAGGAAAGCTG GGGAGGAAATCAGGGACCAGTTATACTGTTTCGAAGATCGTGGGAATCGCCGTGTGGCGTTGAGACCCGAGCTGACACCTTCTCTGGCAAGACTGGTCAT TCAAAAAGGAAAATCTGCACCCTTGCCATTGAAATGGTTTGCTGTTGGACAGTGTTGGCGGTACGAGAGGATGACCAGAGGAAGACGGCGTGAACACTAC CAATGGAATATGGATATTATTGGTGTACCTGAGGTCACTGCTGAAGCAGAGCTCATTTCTTCTATTGTTACATTTTTCAAGCGAATTGGAATAACAGCTG CTGATGTTGGATTCAAGGTTTCAAGCAGAAAGGTTTTGCAGGAGCTATTGCGGCGGTACTCTATATCTGAAAAGGAGTTCGGCAAGGTCTGCGTCATAAT AGACAAGATCGAGAAAATGCCAATAGAAGCAATTAAGAAAGACTTGTCGTCTGTCGGTTTGTCAGAAGATGTCATCCAGGAGCTGCTACAAGTCCTTACA GTAAAGTCCTTGACAAAATTGGAAGAGATACTTGGAGGTTCTGGAGAAGCAGTTGCTGATCTTAAACAACTGTTCTCTCTTGCTGAGAAGTTTGGCTACT CAGAGTGGATTCAGTTTGATGCATCAGTTGTTCGTGGCCTTGCTTATTATACCGGTATTGTTTTTGAGGGTTTTGATAGAGATGGAAAGTTGAGAGCAAT TTGTGGTGGCGGCAGATATGATCGCTTGCTCTCGACCTTCGGTGGTGATGATCTCCCAGCGTGTGGCTTTGGATTCGGGGACGCTGTCATTGTCGAACTT CTAAAGGAGAAGGATCTCTTGCCAGAACTGAGCCTCCAAGTAGACAACATAGTGTGCGCCCTCGATCAAAACCTTCAAGCAGAAGCTGCTGCAATCGCCA CGAATCTAAGGCAGAAAGGCCAAAGCACCGATCTAGTGTTGGAAAACAAATCTCTGAAATGGGTCTTCAAACGCGCAGCACGAGCAAATGCACAAAGGCT GATACTGGTAGGCACAAAAGAGTGGGAAAAGGGTATGGTAAGTGTGAAAATCCTCGCGTCAAATGAACAATACGAGGTTAAGGTTGATGAACTAGATTAG
AA sequence Show only first row Show all	>Lus10023925 pacid=23160742 polypeptide=Lus10023925 locus=Lus10023925.g ID=Lus10023925.BGIv1.0 annot-version=v1.0 MPPITSSLHVVSPRIFLRLKPFFTSLHQLSPSAISPRKFVAPIINRRARFCTVAARDNGGRSGAISGPPVMEGEEAATKIDVNPPKGTRDFPPEEMRLRN WLFYNFKEVSRLYGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSAPLPLKWFAVGQCWRYERMTRGRRREHY QWNMDIIGVPEVTAEAELISSIVTFFKRIGITAADVGFKVSSRKVLQELLRRYSISEKEFGKVCVIIDKIEKMPIEAIKKDLSSVGLSEDVIQELLQVLT VKSLTKLEEILGGSGEAVADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRDGKLRAICGGGRYDRLLSTFGGDDLPACGFGFGDAVIVEL LKEKDLLPELSLQVDNIVCALDQNLQAEAAAIATNLRQKGQSTDLVLENKSLKWVFKRAARANAQRLILVGTKEWEKGMVSVKILASNEQYEVKVDELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10023925 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	1.0	0.8671
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	4.2	0.7772
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	4.5	0.8047
AT4G20190			unknown protein		Lus10038386 [exp]	5.5	0.7532
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Lus10014422 [exp]	7.1	0.7243
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	7.3	0.7458
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	14.7	0.7530
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	15.0	0.7640
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	16.9	0.7182
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	17.0	0.7407

Compare expression of checked genes

Lus10023925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.