Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03415 369 / 1e-126 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) AT5G02470 219 / 1e-69 E2F_DP DPA Transcription factor DP (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014423 [exp] 531 / 0 AT5G03415 404 / 1e-140 Transcription factor DP (.1.2) Lus10022620 [exp] 412 / 2e-144 AT5G03415 393 / 6e-137 Transcription factor DP (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124200 [exp] 399 / 5e-139 AT5G03415 392 / 1e-135 Transcription factor DP (.1.2) Potri.016G093200 [exp] 394 / 5e-137 AT5G03415 371 / 1e-127 Transcription factor DP (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [flax] [poplar] PF08781 [flax] [poplar] DP Transcription factor DP
Representative CDS sequence Show only first row Show all	>Lus10023926 pacid=23160685 polypeptide=Lus10023926 locus=Lus10023926.g ID=Lus10023926.BGIv1.0 annot-version=v1.0 ATGGCCACTGGTGGTGGAGCCTGCCAGGATGACAGGATCCTATCCGCCGCCTCTGCTAGAACGAGGTCTTGGGGGACAGCCACCGCGTCGGGCGGCGGCG GCGGCGGTCAATCGGTGTCGACGAGTGGCAGCGTGGGCTCTCCGTCTAACGCCGCTACTCCCGCGAGTGACAGCACTTACCTCCGCATCAACAACCTCGA CATCCACGCCGACGACGCCGCTACACAGGATGCCGCTAACAAGAAGAAGAAACGAGGTCAACGGGCAGTAGGAGCTGATAAGAGCGGCAGAGGACTCAGG CAGTTTAGTATGAAAGTGTGTGAAAAGGTACAGAGCAAAGGGACAACCACTTACAATGAGGTGGCGGATGAACTTGTAGCAGAGTTTGCTGATCCCGGCG GTGCTGCTGCAGGCCCAGACCAGGTCGTGCCACAATTTGACGAGAAAAACATACGGCGGAGGGTGTATGATGCTCTGAATGTTCTCATGGCTTTGGATAT TATATCTAAGGATAAAAAAGAAATACACTGGAAAGGTCTTCCACGGACCAGTCAGAGTGATATCCAGGAGAAGAAGAGTGAGAAGATTTCATTTAGAAAT AGGAATGAAAAGAAAGCCCAATATCTTAAAGAAATGGAAGACCAGTATTTAGGACTTCAGAATTTGATACAGCGAAACAATCAACTATACAGTTCTGGAA ATGCTCCGAGTGGAGGTGTATCTCTGCCCTTTATCCTGGTGCAGACTCGCCCCCATGCGACCGTCGAAGTGGAAATCTCGGAAGATATGCAACTGGTGCA TTTCGACTTTAACAGCACTCCCTTTGAACTCCATGATGATAACTATGTGCTGAAAGCGATGAAGCTCGGCGAGAGACCACCACACAACAATGGCTCGACA CCAAACATGGTAGTCAGTGGTGGATCAAGCATGAACCACCAGCAGCAGCAGCAGCAGCAATTGATTCCTCCACCTATCACACAAAACACCCCAGTCAGGG CTGCTGCTCCTGCTCCAACTTCACCACCAATTCCCGGGATCATTAAAGTACGGTCAAGGAATGAGCATTGA
AA sequence Show only first row Show all	>Lus10023926 pacid=23160685 polypeptide=Lus10023926 locus=Lus10023926.g ID=Lus10023926.BGIv1.0 annot-version=v1.0 MATGGGACQDDRILSAASARTRSWGTATASGGGGGGQSVSTSGSVGSPSNAATPASDSTYLRINNLDIHADDAATQDAANKKKKRGQRAVGADKSGRGLR QFSMKVCEKVQSKGTTTYNEVADELVAEFADPGGAAAGPDQVVPQFDEKNIRRRVYDALNVLMALDIISKDKKEIHWKGLPRTSQSDIQEKKSEKISFRN RNEKKAQYLKEMEDQYLGLQNLIQRNNQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLGERPPHNNGST PNMVVSGGSSMNHQQQQQQQLIPPPITQNTPVRAAAPAPTSPPIPGIIKVRSRNEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10023926 [exp]	0	1
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	4.5	0.8712
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	7.1	0.8318
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	19.7	0.8352
AT1G60200			splicing factor PWI domain-con...		Lus10029161 [exp]	22.8	0.8261
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	31.8	0.8081
AT1G62770			Plant invertase/pectin methyle...		Lus10024593 [exp]	33.4	0.8313
AT4G35930			F-box family protein (.1)		Lus10025956 [exp]	37.5	0.7782
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	42.0	0.8237
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	46.2	0.8061
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002845 [exp]	52.0	0.8202

Compare expression of checked genes

Lus10023926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.