Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25820 556 / 0 Exostosin family protein (.1) AT5G19670 554 / 0 Exostosin family protein (.1) AT4G32790 545 / 0 Exostosin family protein (.1) AT5G11610 523 / 0 Exostosin family protein (.1.2) AT4G16745 449 / 3e-153 Exostosin family protein (.1.2) AT5G37000 434 / 2e-147 Exostosin family protein (.1) AT5G03795 330 / 6e-107 Exostosin family protein (.1) AT3G07620 307 / 7e-99 Exostosin family protein (.1) AT5G25310 299 / 2e-95 Exostosin family protein (.1) AT5G11130 284 / 1e-89 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002799 [exp] 576 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 573 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 560 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 550 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 545 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 544 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 459 / 4e-157 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 449 / 1e-153 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10014424 [exp] 415 / 7e-144 AT5G25820 274 / 9e-88 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238900 [exp] 660 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 579 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 574 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 541 / 0 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 523 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 452 / 2e-154 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 336 / 2e-109 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 335 / 2e-109 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 314 / 2e-101 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 310 / 9e-100 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10023927 pacid=23160740 polypeptide=Lus10023927 locus=Lus10023927.g ID=Lus10023927.BGIv1.0 annot-version=v1.0 ATGAACAATGGAATTCAATTTCTGTGTCATGCGGAAGCAAGGAGATTGCTTTTGCTAGTGGGAGCTGCTTTTGTTCTAGTCATTGCGGTTCAGTATTTTG AAATCCCATCCATCGGAGCTTTCTCTTCTTTATTTGTCGGCAACGCCAGCAGCCTAATGTCCAATGGCGATGGTCTTGGAGGAACCGCAACAACTCCAAG TCTCGTCAGCCGCTCCAATGTCGATTCAGAGAATGCATCTACAGCAAGGAAAGCTATGCCACCGGTTGAGAGTGGCAGCAGCATTGTTAACGCAGCAAAG AATAATAATAATTCTTCACCTGTGGCTGTCAATAGTTCTATTGCTTCCATACATGGAGTTAAACCAGGGAAAAACAAGAAGTATAAGCCACCTTCCAAAG TAGTACCAATTTCAGAGATGAATAACTTGTTACACCAGAGATACGCTTCTTCTCCTTCCATGATACCCAAATTGTCTTCAGAGGTTGACAAGGAAATGCT CCACGCAAGATCAGAAATTGAGAAAGCAGCTGTCAGGAGAGATGATCCGGAGCTCTACGCACCTATCTACCGAAATGTTTCCATGTTCAAAAGGAGCTAT GAGCTGATGGAGAGTTTGCTCAAAGTTTATGTATACCAAGATGGGGAAAAGCCAATCTTCCACGAGTATATACTCGAGGGAATATATGCTTCTGAAGGAT GGTTTATGAAGCTTATGGAGAACAACAAACACTTCGTAACGAAAGACCCTTCCAAAGCTCACTTGTTCTACATTCCGTTCAGTTCTCGACTTCTGGAGTT GAAACTCTACGTGAGAAAGTCTCACAGCCGCGTAAACCTTGTCGAATACATGAAAAGCTTTGTAGATATGCTGGGAGAGAAATATCCCTTTTGGAACCGG ACCGATGGAACTGATCATTTCGTTGCTGCCTGCCATGACTGGGCACCGGCTGAAACAAGGGGGCGTATGCTGAAATCCATCAGAGCCCTTTGCAATTCCG ACCTGGAAGTTGGTTTCACCATAGGCAAAGATGTGTCCCTTCCGGAAACATACATTCGGTCAGCAAAGAATCCTCTCAAGAACTTGGAAACCGACCTACC ATCAAGCTTCCAGAGAAAGATCCTTGCTTTCTTTGCAGGGAACGTCCATGGCTATGTCCGGCCGATTCTGCTAGAGCATTGGGAGAACAAAGATCCCGAA ATGAGGATCACTGGTCCAATGCCTCATGTGAAGGGTGGCAGAAACTACATTGAAATGATGAAGAGCAGTAAGTTCTGTATTTGTCCGAGAGGGTTTGAAG TGAATAGCCCGCGGATCGTTGAGTCCATATTCTTCGAGTGTGTTCCGGTGGTCATCTCGGATAACTTTGTGCCGCCGTTTTTTGAGGTTCTGCAGTGGGA ATCGTTTGCTGTGTTTGTGTTGGAGAAGGATATTCCGAACCTGAAGAAGATACTTGTGTCGATTTCGGAGGAGAGGTATATGGAGATGCATAAGAGGGTG AAAATGGTGCAGAAGCATTTTCTTTGGCATGATCAGCCTTTCAAGTACGATTTGTTTCATATGCTTCTTCACTCGGTATGGTATAACAGAGTCTTTCAGA TGACACCATCTTAG
AA sequence Show only first row Show all	>Lus10023927 pacid=23160740 polypeptide=Lus10023927 locus=Lus10023927.g ID=Lus10023927.BGIv1.0 annot-version=v1.0 MNNGIQFLCHAEARRLLLLVGAAFVLVIAVQYFEIPSIGAFSSLFVGNASSLMSNGDGLGGTATTPSLVSRSNVDSENASTARKAMPPVESGSSIVNAAK NNNNSSPVAVNSSIASIHGVKPGKNKKYKPPSKVVPISEMNNLLHQRYASSPSMIPKLSSEVDKEMLHARSEIEKAAVRRDDPELYAPIYRNVSMFKRSY ELMESLLKVYVYQDGEKPIFHEYILEGIYASEGWFMKLMENNKHFVTKDPSKAHLFYIPFSSRLLELKLYVRKSHSRVNLVEYMKSFVDMLGEKYPFWNR TDGTDHFVAACHDWAPAETRGRMLKSIRALCNSDLEVGFTIGKDVSLPETYIRSAKNPLKNLETDLPSSFQRKILAFFAGNVHGYVRPILLEHWENKDPE MRITGPMPHVKGGRNYIEMMKSSKFCICPRGFEVNSPRIVESIFFECVPVVISDNFVPPFFEVLQWESFAVFVLEKDIPNLKKILVSISEERYMEMHKRV KMVQKHFLWHDQPFKYDLFHMLLHSVWYNRVFQMTPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	1.7	0.8886
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	4.0	0.8667
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	6.7	0.8567
AT1G76970			Target of Myb protein 1 (.1)		Lus10017220 [exp]	6.9	0.8082
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	8.2	0.8522
AT4G19460			UDP-Glycosyltransferase superf...		Lus10033297 [exp]	8.5	0.8367
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	10.2	0.8447
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	13.0	0.8193
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10019227 [exp]	13.1	0.8161
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	13.6	0.8185

Compare expression of checked genes

Lus10023927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.