Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36910 2037 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 1218 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 1081 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1066 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G28010 1041 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28345 952 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 937 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT1G02520 933 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G28360 922 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT2G47000 919 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014427 [exp] 1924 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10005249 [exp] 1219 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 1216 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 1070 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1049 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10039533 [exp] 965 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 960 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 959 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 959 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093600 [exp] 2123 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 2113 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.017G081100 [exp] 1232 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 1090 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 1078 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 1055 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 1038 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G074000 [exp] 962 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.014G113500 [exp] 959 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G085000 [exp] 949 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023929 pacid=23160793 polypeptide=Lus10023929 locus=Lus10023929.g ID=Lus10023929.BGIv1.0 annot-version=v1.0 ATGTCCAAGGAAGCAGCAGCTGGAGAAGAAGAGCCAATTGAGCAGTGGAAATGGTCAGAAATGCAAGGCCTTGAGCTCGTCTCTTCTCCTCCTCCTTCTT CTTTACCTCCTTCCAATCCAGAACCAGCAATGGAAACCACCAGCAAGGACATCAATATTACTGAGCCGAAGAAGGAAGCTTCTGCTGCAGATGCGGAGAA AACAGGGGAAGTTGCAGCAGTCGGATTCAAGCAGCTCTTCAGATTCGCAGATGGGTTGGATTACGTGTTGATGGGAATTGGTTCAGTGGGTGCTTTTGTC CATGGCTGCTCTCTCCCTCTCTTTCTCAGATTCTTTGCCGATCTTGTTAACTCGTTCGGGTCTAATGCCAATGACCTGGATAAGATGACCCAGGAAGTCT TGAAGTATGCGTTTTACTTCCTTGTGGTTGGAGCAGCAATCTGGGCTTCTTCATGGGCAGAGATATCTTGTTGGATGTGGACTGGTGAAAGGCAGACCAC CAAGATGAGGATTAAGTATCTGGAAGCTGCTTTGAACCAAGACATTGAGTATTTCGATACTGAAGTACATACCTCCGACGACGTCTCTGCCATCAACACC GATGCAGTCACAGTCCAGGACGCCATTAGTGAGAAGCTGGGTAATTTCATCCATTACATGGCAACATTGGTTTCCGGATTTGTTGTTGGATTCACTGCAG TTTGGCAATTAGCACTTGTGACACTCGCAGTGGTTCCTCTCATAGCTGTAATCGCTGCTATCCACACCACGACATTGGCGAAACTCTCTGGTAAAAGTCA AGAAGCTCTGTCTGAAGCTGGGAATATCGTCGAACAGACGGTGGTTCAAATCCGAGTTGTGTTTGCATACGTGGGAGAATCGAGATCGCTGTCTGGATAT TCATCAGCGTTGAGAGTTGCTCAGAAGCTTGGTTACAAGAGCGGGATAGCCAAAGGACTTGGATTGGGAGGAACTTACTTTGTTGTTTTCTGCTGCTACG CTCTTCTACTATGGTACGGCGGCTACCTCGTTCGCCATCACTACACCAATGGCGGGCTCGCCATTTCCACCATGTTCGCCGTCATGATTGGAGGACTGGC ATTGGGACAAGCGGCGCCGAGTATGAGCGCCTTCGCCAAAGCCAGAGTTGCGGCGGCGAAGATTTTCCGGATAATCGACCACAAGCCGGCGGTGAATCGT AACAGCGAGTCAGGTCTTGAATTGGACTCGGTGACTGGGTTAGTAGAGCTTAAGAATGTGGATTTCTCGTACCCGTCGAGGCCGGATGTCCGGATCTTGA ACAATTTCTCGCTTACGGTTCCCGCCGGCAAAACCATAGCTTTAGTCGGAAGCAGCGGGTCCGGGAAGAGCACGGTGGTTTCCTTAATCGAGAGGTTCTA CGATCCCGAATCTGGTCAAGTGCTGCTAGATGGGCATGAGATAAAGACAATGAAGCTGAAATGGCTGAGGCAACAAATAGGGCTTGTGAGCCAAGAGCCA GCTTTGTTTGCTACATCAATCAAAGAGAATATACTTCTGGGCAGGCCAGATGCAGATATGGTTGAAGTTGAGGAAGCTGCAAGAGTTGCCAATGCGCATT CTTTCATCATCAAGTTACCAGATGGGTACGACACTCAGGTGGGTGAGAGAGGACTGCAGCTGTCCGGTGGACAGAAACAGCGAATAGCAATAGCAAGGGC GATGCTGAAGAACCCAGCAATCCTTCTCCTGGACGAGGCAACGAGTGCATTGGACTCCGAGTCGGAGAAACTAGTTCAGGAAGCCCTTGACAGATTCATG ATTGGGAGGACAACTTTGATCATTGCCCACCGGCTTTCTACCATTCGAAAGGCTGATCTCGTGGCGGTTCTACAACAGGGTTCCGTCACTGAAATCGGGA CTCATGATGAACTCTTTTCCAAAGGAGAAAACGGTGTCTATGCCAAGCTCATCAAGATGCAGGAGGCTGCACATGAAACCGCTATGAGCAATGCTAGGAA GAGCAGTGCAAGGCCTTCAAGTGCTAGGAACTCCGTGAGCTCACCGATAATTGCGAGAAACTCGTCTTATGGCCGATCGCCATATTCGCGCAGGCTATCT GATTTCTCCACTTCAGATTTCAGCCTCTCCTTCGACGCCATGCACACTAATTACCGTCTTGAAAAGCTTCAATTCAAAGAGCAGGCGAGTTCCTTCTGGC GACTCGCGAAGATGAATTCCCCCGAATGGGGTTATGCATTTGCTGGTTCGATTGGCTCGATTGTTTGTGGCTCCCTTAGTGCATTCTTCGCATACGTACT GAGTGCTGTCCTTAGTATCTACTACAGCCCCGACCATGCTTACATGATCAGAGAAATTGCAAAGTACTGCTACTTGTTAATCGGACTTTCGTCAGCTGCT CTTATCTTCAATACCTTGCAACACTCGTTCTGGGACATTGTGGGAGAGAATCTTACGAAACGGGTGAGGGAGAAGATGCTGACTGCTGTGCTTAAAAATG AGATGGCATGGTTCGATCAGGAAGAGAATGAGAGTGCTAGAATTGCAGCAAGATTGTCTCTTGATGCGAATAATGTTCGTTCGGCCATTGGAGACCGGAT TTCTGTGATTGTGCAGAATACTGCACTTTTGCTGGTTGCTTGCACTGCAGGGTTTGTCTTGCAATGGCGCCTAGCCCTTGTCCTCATTGCTGTTTTTCCC GTGGTCGTCGCAGCCACAGTTTTGCAGAAAATGTTCATGCAAGGCTTCTCAGGAGACTTGGAAGCAGCTCATGCAAAGGGCACACAGCTAGCGGGGGAAG CCATAGCCAACGTGAGGACTGTTGCTGCCTTCAATTCGGAGACGAAGATCGTTAATCTTTACTCAAGCAACCTCCAAATCCCTCTGAAGCGCTGCTTCTG GAAGGGACAGATAGCAGGAAGTGGATACGGAATAGCTCAGTTTCTTCTCTATGCTTCCTACGCTCTTGGTCTTTGGTATGCATCATGGCTTGTGAAGCAC GGCATCTCTGATTTCTCCAAGACTATCCGAGTCTTCATGGTCCTTATGGTCTCAGCCAACGGTGCTGCCGAAACCCTTACATTAGCTCCGGACTTCATCA AAGGCGGCAGAGCAATTAGATCTGTCTTCGAACTTCTCGACCGTAAGACTGAGATCGAACCTGATGATCCGGACTCCATGCCAGTGCCGGATCAAATCCG TGGAGAGGTCGAACTTAGACATGTCGACTTTTCCTACCCTAGTCGTCCCGATGTCCCCATTTTCCGGGACCTCAGCCTTCGAGCTCGAGCTGGCAAGACT CTAGCACTGGTTGGACCGAGCGGGTCGGGGAAAAGCTCGGTCATTTCGTTGATACAACGATTCTACGATCCATCGTCTGGTCGGGTTATGATCGATGGGA AGGATATCCGAAAGTACAATCTCAAGTCCTTGAGGAAGCACATTGCTGTAGTGCCTCAAGAGCCATGTCTATTTGCTACCACCATATATGACAACATTGC ATATGGACATGAATCGGCTAGTGAAGCTGAAATCATGGAAGCTGCTACTCTAGCGAACGCGCATAAGTTCGTTTCGTCGTTGCCAGATGGTTACAAGACA CATGTCGGGGAAAGAGGGGTGCAACTTTCAGGTGGACAGAAGCAGAGAATCGCCATTGCTCGAGCATTGCTCAGGAAAGCCGAGCTTATGTTGCTGGACG AGGCTACAAGTGCGTTGGATGCTGAATCGGAGAGATCGGTCCAGGAAGCTCTCGATCGAGCTTGCTCGGGGAAGACCACGATCATCGTTGCTCATAGGCT TTCGACGATAAGGAATGCTAGTGTCATTGCGGTTATAGATGATGGGAAAGTAGCTGAGCAAGGGTCTCATTCACACTTGCTGAAGAACTACCCTGATGGG ATCTATGGTCGAATGATTCAGATGCAAAGGTTCACGAATGGCAAGGTGATCGGAATGAGTTCAGGTTCGAGTTCTTCGGCCAGGCCTAATAAGGATGATG AAGATAAAGAAGCTTAG
AA sequence Show only first row Show all	>Lus10023929 pacid=23160793 polypeptide=Lus10023929 locus=Lus10023929.g ID=Lus10023929.BGIv1.0 annot-version=v1.0 MSKEAAAGEEEPIEQWKWSEMQGLELVSSPPPSSLPPSNPEPAMETTSKDINITEPKKEASAADAEKTGEVAAVGFKQLFRFADGLDYVLMGIGSVGAFV HGCSLPLFLRFFADLVNSFGSNANDLDKMTQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQDIEYFDTEVHTSDDVSAINT DAVTVQDAISEKLGNFIHYMATLVSGFVVGFTAVWQLALVTLAVVPLIAVIAAIHTTTLAKLSGKSQEALSEAGNIVEQTVVQIRVVFAYVGESRSLSGY SSALRVAQKLGYKSGIAKGLGLGGTYFVVFCCYALLLWYGGYLVRHHYTNGGLAISTMFAVMIGGLALGQAAPSMSAFAKARVAAAKIFRIIDHKPAVNR NSESGLELDSVTGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPESGQVLLDGHEIKTMKLKWLRQQIGLVSQEP ALFATSIKENILLGRPDADMVEVEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM IGRTTLIIAHRLSTIRKADLVAVLQQGSVTEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLS DFSTSDFSLSFDAMHTNYRLEKLQFKEQASSFWRLAKMNSPEWGYAFAGSIGSIVCGSLSAFFAYVLSAVLSIYYSPDHAYMIREIAKYCYLLIGLSSAA LIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALLLVACTAGFVLQWRLALVLIAVFP VVVAATVLQKMFMQGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSETKIVNLYSSNLQIPLKRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKH GISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAIRSVFELLDRKTEIEPDDPDSMPVPDQIRGEVELRHVDFSYPSRPDVPIFRDLSLRARAGKT LALVGPSGSGKSSVISLIQRFYDPSSGRVMIDGKDIRKYNLKSLRKHIAVVPQEPCLFATTIYDNIAYGHESASEAEIMEAATLANAHKFVSSLPDGYKT HVGERGVQLSGGQKQRIAIARALLRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNASVIAVIDDGKVAEQGSHSHLLKNYPDG IYGRMIQMQRFTNGKVIGMSSGSSSSARPNKDDEDKEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	0	1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	1.0	0.9364
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	1.7	0.9158
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	2.0	0.9195
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	3.7	0.9000
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	4.0	0.9153
AT1G13900			Purple acid phosphatases super...		Lus10036895 [exp]	4.5	0.8746
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	5.0	0.9107
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	5.5	0.9038
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	6.3	0.8998
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	6.3	0.8946

Compare expression of checked genes

Lus10023929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.