Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 657 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 619 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 523 / 3e-174 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 515 / 2e-171 NLP5 Plant regulator RWP-RK family protein (.1) AT4G38340 435 / 4e-141 NLP3 Plant regulator RWP-RK family protein (.1) AT1G64530 391 / 2e-123 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 383 / 3e-119 NLP7 NIN like protein 7 (.1) AT3G59580 341 / 3e-104 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 316 / 2e-94 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G66990 57 / 2e-08 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014428 [exp] 1494 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 515 / 1e-170 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 510 / 8e-169 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 382 / 1e-118 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10013224 [exp] 374 / 3e-118 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 360 / 5e-112 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 357 / 1e-109 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 348 / 1e-106 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 306 / 6e-93 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205500 [exp] 682 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 682 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 585 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 581 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 579 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 565 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 550 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 393 / 1e-122 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 392 / 2e-122 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 365 / 3e-112 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10023930 pacid=23160819 polypeptide=Lus10023930 locus=Lus10023930.g ID=Lus10023930.BGIv1.0 annot-version=v1.0 ATGGATCATGATGGTGGTGGTGCCTTTACCCCCAACTCCACTTTTGGGAACTTGATCTCATCATCCACCATGGATTTGGATCCTTTCATGGATCAAATCT TTGATGAAAGGTGTTGGATGGGAACTCCTCCTGATGGATTCAGCTTCTTATCACAACCAAGTCCTCCAACATCGTTGATTATACCAGAACTCCAACACCA CAACCCAAATCCTCAACAAGACATCAACTTCCAAGGTGGACGACACGAAAATCGTCAATTTATCCCTCCTTCAATTAAAGACCGATTGGAATATGCAATC AGGAAGTTGAAAGAGTACACTGACCCCAGAGATGTTCTTGTACAAATATGGGTCCCCATAACTAAAGGAGGCAAGCATCTTCTCACCACCAAAGACCAGC CATACTTCATCACTCCCAAGTGCATGAACCTTGCTAGCTATCGGAATGTCTCGAAAGAGTATCACTTTGGGGCCGACTTGGATTCCCAAGTGTTGGTTGG GCTACCCGGTCGAGTTTTCTTGGGGAAGTTGCCTGAGTGGACACCGGATGTTCGCTACTTCAAACCTGAGGAGTATCCACGTAAAAGCTATGCAGCTCAA TACAGCATCAGCGGTTCTCTTGCGTTTCCTGTATTTGAGCGTGGAAACGGGACTTGTTTGGGTGTCGTAGAGGTTATAACGACAACTCGTGATATCCAGT ACCGTCCTGAGCTTGAAAATGTCTGCAAAGCTCTTGAGGCTGTTGACTTAAGCAGTTCAGTGGATTTCATTCCTCCTAGTGTGAAGGGTTGTAAAGAGTT TTGTGAAGCAGCAGTTCCTGAACTATTTGATATTTCGGCATCTGTCTGTAAGACTCACAGGTTGCCTTTAGCTCTAACATGGGCACCTTGTTTCCAACAA GGCAAAGGTGGATGTCGCCATTTCGACGAGAGCTATGCTCGTTACATCTCCACTGTGGATGCAGCCTGCTTTGTGGCCCACACAGAGTTATTGGCCTTCC ATACTGCTTGTTCGGAGCAGTACCTTTTCCTCGGTCAAGGACTCGTCGGCAAAGCATTCACAACGAACAAACAATGCTTTGCACCAAATGTGAGTGCCTT GAGCAAGGCAGCTTATCCTCTCTCTCACCATGCCATGGTTGTTGGCCTGCAAGCCGCCATAGCAATCCCACTGCAAAGTTCCACAACTGGTTTTGTCCTG GAATTGTTCCTGCCAAAAGATTGCCAAGATCCCGGTGAACAAAACAAGCTCCGAGACATGCTCCCCCTCACTGTGCAGCAGGCTTCTCGTAGTTTACACG TTGTAATGGAGCGAGAAGAACTCGAGGAAGGGAGATCATTTCAGTCGGTGAAGAAAACCAGCCATGAAGAGCCATCAGCATGGATCAGCCAGTTTATGGA GGTTCAGCCGAAACGTGATGACACCTTTTCTTTCTCGAGGGAATGCCTGAAGGAAGAACCTCAAGAAGAGTTCAAGGTGACATGGGAAAACAATCAAAGG GAGGTGAACCGTAATACATTGGTTTCTACTGAGCATCCTTCATCTAGCATTAGAAGAATGAGTGAGAAGAGAAGGACCAAAACTGAGAAGACAGTTAGCT TGGATGTACTGAGGCAGTACTTTGCAGGGAGCCTTAAAGATGCTGCCAAGAGTCTTGGTGTGTGTCCAACTACACTGAAAAGGATATGCAGGCAATATGG AATCAACCGCTGGCCATCTCGAAAGATTAAGAAAGTTGGCCACACTTTGAAGAAACTCCAGCTCGTAATCGACTCAGTGCAAGGCGCAGATGGTGCCATT CAAATCGGGTCCTTCTACACAACTTTCCCTGATCTGACATCTCCAAACCATTCAGGAAACGTCCATTGTCAGCAGGTAGTACATGCTCAACCCGAACTCA ACACAAACACTTCGAAATCCACATCCACATCCAGCAGCCAGAGCTCGGGTTGTAGTTCGTGTTATTCTGCTGGAGCTGAGCTCAAGAGAACTCGAAGCGA TGCAGAGTTACTCGTCTTGAATCACGATTATGAAGCACAGCCTCTTCTTTCCAGATCCCAAAGCCATAGACTGCTGCTTGGTGGAGGCGAATGCTCAGGT TCTGGCTTTCACAAACCAGGTTGCAGGAAGTTAAGGGACGGGAGTGACTTCCGAGTAAAGGCTTCTTTCGGATCAGACAAGGTAAGGTTCAGCTTGCCAT CGAGCTGGGGATTCAAGGAATTTAAGCAAGAGGTGATGAACAAGTTCAATGTAGATGAATCAGGTGCCTGCAGAGTTGATCTCAAGTACTTGGATGATGA TCAAGAGTGGGTTCTTTTGACATGTGACGATGATCTTGAAGAATGCAAGGATGTGTATAGATCAGAACAGCGGCACACAATCAAACTTTCACTTCATATG AAACCTGGCGCAGTTCCAGCAATGAACTGA
AA sequence Show only first row Show all	>Lus10023930 pacid=23160819 polypeptide=Lus10023930 locus=Lus10023930.g ID=Lus10023930.BGIv1.0 annot-version=v1.0 MDHDGGGAFTPNSTFGNLISSSTMDLDPFMDQIFDERCWMGTPPDGFSFLSQPSPPTSLIIPELQHHNPNPQQDINFQGGRHENRQFIPPSIKDRLEYAI RKLKEYTDPRDVLVQIWVPITKGGKHLLTTKDQPYFITPKCMNLASYRNVSKEYHFGADLDSQVLVGLPGRVFLGKLPEWTPDVRYFKPEEYPRKSYAAQ YSISGSLAFPVFERGNGTCLGVVEVITTTRDIQYRPELENVCKALEAVDLSSSVDFIPPSVKGCKEFCEAAVPELFDISASVCKTHRLPLALTWAPCFQQ GKGGCRHFDESYARYISTVDAACFVAHTELLAFHTACSEQYLFLGQGLVGKAFTTNKQCFAPNVSALSKAAYPLSHHAMVVGLQAAIAIPLQSSTTGFVL ELFLPKDCQDPGEQNKLRDMLPLTVQQASRSLHVVMEREELEEGRSFQSVKKTSHEEPSAWISQFMEVQPKRDDTFSFSRECLKEEPQEEFKVTWENNQR EVNRNTLVSTEHPSSSIRRMSEKRRTKTEKTVSLDVLRQYFAGSLKDAAKSLGVCPTTLKRICRQYGINRWPSRKIKKVGHTLKKLQLVIDSVQGADGAI QIGSFYTTFPDLTSPNHSGNVHCQQVVHAQPELNTNTSKSTSTSSSQSSGCSSCYSAGAELKRTRSDAELLVLNHDYEAQPLLSRSQSHRLLLGGGECSG SGFHKPGCRKLRDGSDFRVKASFGSDKVRFSLPSSWGFKEFKQEVMNKFNVDESGACRVDLKYLDDDQEWVLLTCDDDLEECKDVYRSEQRHTIKLSLHM KPGAVPAMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	1.7	0.8766
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	2.0	0.8803
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10020726 [exp]	2.6	0.8834
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	2.8	0.8743
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	7.2	0.8551
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	9.5	0.8608
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032217 [exp]	10.9	0.8664
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	11.0	0.8493
AT5G04440			Protein of unknown function (D...		Lus10037929 [exp]	11.8	0.8534
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	13.4	0.8522

Compare expression of checked genes

Lus10023930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.