Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76350 127 / 2e-32 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 126 / 6e-32 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G35270 126 / 6e-32 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 125 / 1e-31 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 110 / 2e-26 NLP3 Plant regulator RWP-RK family protein (.1) AT1G64530 108 / 1e-25 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 103 / 3e-24 NLP7 NIN like protein 7 (.1) AT3G59580 103 / 3e-24 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 90 / 1e-19 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G53040 54 / 3e-08 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014429 [exp] 580 / 0 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10022621 [exp] 184 / 4e-54 AT2G17150 212 / 3e-60 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 139 / 3e-36 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10014428 [exp] 125 / 2e-31 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 125 / 2e-31 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 121 / 5e-30 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 120 / 7e-30 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 118 / 4e-29 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 115 / 2e-28 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009700 [exp] 134 / 1e-34 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166932 [exp] 134 / 2e-34 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.005G251700 [exp] 133 / 3e-34 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 133 / 3e-34 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G293300 [exp] 130 / 6e-34 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.009G087500 [exp] 129 / 1e-33 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 123 / 5e-31 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 123 / 5e-31 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 122 / 1e-30 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 110 / 2e-26 AT4G24020 991 / 0.0 NIN like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10023931 pacid=23160739 polypeptide=Lus10023931 locus=Lus10023931.g ID=Lus10023931.BGIv1.0 annot-version=v1.0 ATGGACGCAGATTCCTTCACACCATTCCCCGATTTCAATCAATTCGCATCTTCCTCGCCAGATTCCATCAACTGGGATTTCGTCCACGAATCCTTACTGT ATCAGGACTACTCCTGGTTCGACGAAATCGACTCTGGTTTTGACTTCATCCCTCAACCGGACCTTCATCTTCTTCCGGTTCATACGGTTGAAGAAGAAGC AATCAAACCCACCTCCGAAGCGTCAAATTCTGGAAAGGAAGGGACGAATTTCTCGTGGGATTGTGTTCCCAAGGTAGAACTCAGAGAGGAGGGTTTCAAG GTCTTGACCCGTTGGGAAGATGAACCACCAGAGATGGAATTCGAATCGCAGAAAGGGATTCTAATTGGATGGAGTACTACTCAGCAATCCAAGTCCAGGA AGAAGAAGAGGGCAGGGAAGATGGAGCAGAAGATCAGCTTGCAAATGTTGAGAGGATACTTCGCTGGTAGCCTTAAAGATGCTGCTAAAGAAATCGGAGT TTGTGCAACGACGTTGAAAAGGATATGCAGGCAGCATGGGATAAAGCGTTGGCCATCGAGGAAGATCAAGAAAGTGGATCACTCCTTGAAGAAGCTTCAA CGGGTGATCGACTCTGTTCATGAAGGAGCTCAAATTGGTTCCTTTTACTCAGATTTTCCCCAGTTGAACACCACCAACATCACCACTACTAGTTCCGAGG AAACGTCGAAAGCTGAGGTTGATGATCGTTCCATCTTTCGAGTGAAGGCGCGATTTGGGGACGAAAATGTGAGGTTGGTGATGAGCCCAAGCTGGGGAGT GAGGGAGTTGAAGCAAGAGATTGGGAAGAGGTTTGGTGTGCAGGATGCTGTGGCGTTAGGGTTTGTGGGGTTTAGATACTTGGATGAAGATGGCGAATGG GTTCATTTGAGTTGTGATGATGATCTTCAGGATTGTAAAGAGATGCACAGGGTCTCTGACAGGAATGCTATCAGGATATCCCTTCACCATACCTAA
AA sequence Show only first row Show all	>Lus10023931 pacid=23160739 polypeptide=Lus10023931 locus=Lus10023931.g ID=Lus10023931.BGIv1.0 annot-version=v1.0 MDADSFTPFPDFNQFASSSPDSINWDFVHESLLYQDYSWFDEIDSGFDFIPQPDLHLLPVHTVEEEAIKPTSEASNSGKEGTNFSWDCVPKVELREEGFK VLTRWEDEPPEMEFESQKGILIGWSTTQQSKSRKKKRAGKMEQKISLQMLRGYFAGSLKDAAKEIGVCATTLKRICRQHGIKRWPSRKIKKVDHSLKKLQ RVIDSVHEGAQIGSFYSDFPQLNTTNITTTSSEETSKAEVDDRSIFRVKARFGDENVRLVMSPSWGVRELKQEIGKRFGVQDAVALGFVGFRYLDEDGEW VHLSCDDDLQDCKEMHRVSDRNAIRISLHHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	0	1
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	3.7	0.9363
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	3.9	0.9366
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	4.0	0.9332
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017487 [exp]	5.2	0.9292
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10004990 [exp]	6.5	0.9237
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	7.1	0.9343
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	12.4	0.9186
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	13.4	0.9251
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	14.5	0.9265
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	15.1	0.9320

Compare expression of checked genes

Lus10023931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.