Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35280 108 / 2e-28 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 81 / 2e-18 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT2G26940 53 / 3e-08 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35700 51 / 1e-07 C2H2ZnF DAZ3 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) AT4G35610 51 / 2e-07 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G56200 47 / 4e-06 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT1G26610 42 / 0.0001 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016698 [exp] 52 / 9e-08 AT4G35700 74 / 4e-15 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10035994 [exp] 50 / 3e-07 AT4G35610 68 / 5e-13 zinc finger (C2H2 type) family protein (.1) Lus10041659 [exp] 50 / 3e-07 AT4G35700 72 / 2e-14 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10024763 [exp] 41 / 0.0004 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 40 / 0.0007 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10036889 [exp] 40 / 0.0008 AT1G26610 151 / 9e-43 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205300 [exp] 112 / 7e-30 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G166200 [exp] 112 / 1e-29 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.005G100300 [exp] 61 / 4e-11 AT4G35700 68 / 4e-13 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Potri.002G143600 [exp] 45 / 1e-05 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.001G224600 [exp] 45 / 3e-05 AT5G56200 71 / 8e-13 C2H2 type zinc finger transcription factor family (.1) Potri.010G159600 [exp] 42 / 0.0001 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023932 pacid=23160676 polypeptide=Lus10023932 locus=Lus10023932.g ID=Lus10023932.BGIv1.0 annot-version=v1.0 ATGACGAACAACAACTCCATGAACGAAACCCTCCACCAAGATTTCATCTTTCCGTCTTCCCCTTCATCTTCCCCTCCAACGCCGTCGATTTCCTCGCTCA AAAGCCCCAATCCCAGGAGAAAGAAGAGGACCAAGTTGAGCAAGATCCTGTTTCTGGATTCTCATTCGCCTTCTTCTTCTTCTCCGTCTTCTTCCTCTCG TCCTTTATCCGTTAAGAAGAGCAAGAAGCCGGACCCATCGGCGCCAAAGATCACCAAGCCGTGCACTGAATGCGGGAAGAAGTTCTGGTCCTGGAAGGCT CTCTTTGGCCACATGAGGTGTCACCCTGAACGGCAGTGGCGCGGGATTAACCCTCCCCCTAATCACCATCGCCGGCCTGCGACGCCTTCGCCGCCGCCGC TCGTGATTTCCCATTCTTCTTCGCCTATGCCGCTGCGGTCGATTGAGGACGAGGCCCACATCCTGGGCCAACTGATGAGAATGGTGACCGCCGAGGACCG CGAGGTTGCTGATTGCTTACTCTTCTTGTCGAATTACACTCCTCAGCGGGACGAAACCCTTGTTCCAAAAGTAGTGGAATTGGAAGACAGAGCCGCCTTT ACCGCCGCCGGTGGAATTGTGCCCTTTTCCGAGGGTCACCAAGCGTAA
AA sequence Show only first row Show all	>Lus10023932 pacid=23160676 polypeptide=Lus10023932 locus=Lus10023932.g ID=Lus10023932.BGIv1.0 annot-version=v1.0 MTNNNSMNETLHQDFIFPSSPSSSPPTPSISSLKSPNPRRKKRTKLSKILFLDSHSPSSSSPSSSSRPLSVKKSKKPDPSAPKITKPCTECGKKFWSWKA LFGHMRCHPERQWRGINPPPNHHRRPATPSPPPLVISHSSSPMPLRSIEDEAHILGQLMRMVTAEDREVADCLLFLSNYTPQRDETLVPKVVELEDRAAF TAAGGIVPFSEGHQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35280	C2H2ZnF	DAZ2	DUO1-ACTIVATED ZINC FINGER 2, ...		Lus10023932 [exp]	0	1
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	12.5	0.5571
AT2G33280			Major facilitator superfamily ...		Lus10004407 [exp]	31.7	0.5015
					Lus10032837 [exp]	37.5	0.4967
AT3G60730			Plant invertase/pectin methyle...		Lus10009287 [exp]	69.8	0.4584
					Lus10016158 [exp]	88.9	0.4823
AT4G20040			Pectin lyase-like superfamily ...		Lus10008272 [exp]	94.4	0.4801
AT1G57790			F-box family protein (.1)		Lus10019204 [exp]	120.9	0.4280
					Lus10035030 [exp]	121.4	0.4456

Compare expression of checked genes

Lus10023932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.