Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45250 82 / 2e-18 Integral membrane protein hemolysin-III homolog (.1.2) AT4G38280 81 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014432 [exp] 457 / 3e-164 AT2G45250 103 / 3e-27 Integral membrane protein hemolysin-III homolog (.1.2) Lus10022622 [exp] 127 / 3e-36 AT4G38280 110 / 2e-31 unknown protein Lus10003319 [exp] 115 / 3e-31 AT2G45250 85 / 1e-20 Integral membrane protein hemolysin-III homolog (.1.2) Lus10022623 [exp] 69 / 2e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166100 [exp] 177 / 3e-54 AT4G38280 106 / 4e-28 unknown protein Potri.004G205200 [exp] 173 / 2e-52 AT4G38280 100 / 6e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023933 pacid=23160759 polypeptide=Lus10023933 locus=Lus10023933.g ID=Lus10023933.BGIv1.0 annot-version=v1.0 ATGGTTCAGAAGATGACAAGCTCCGAAATTGGCGAGTGTATGATGGGTAATACTGAGCCAAACTCGTCTGGTTGTGATAAGCAGTTTCCAGTTGCTGTTA AGAAAGCAGCTTTAAGAGATGTGCAGAATCAGAACAAGTCACACAACAACTCCATTGCCGCCAGTTCTCCATTGACTAAGAAAGGTGGACAAAGTATGGA CACCGTCAAGGTTTCTGGTACCAAGAGAACCTCACCAGAGAGTCCAGTAGGCCATCCGTGTCGTAACCAATCCCCAAACAGCAATGCAGCCAATGCTCAA CTTGTCTATGTTCGTAGGAAACCTGAAGCTGAAATAGCCAAGAATAGTGGCAGTGATGGAACGAGCTTGAACTCTAACTCCCCAATTCGACACCGGTTTG GCCACTCTGCGGCGACCACCACCAACCAACTGAAATCACCTGCCAATGTGCCAAAGTTTTATCGCCTTTCAGCATTCGCACCACCTATTGCAACTGGTTC CACAACAAGTACATCAGGAAAACCTTCAGTTTCAGCGCCGTCCAGCTATCATCGCTTTACTTGTGCAGTACCTTTTTCTGATGATGGGAAGGGGCTGAAA CGTACGCATTGGGAGGAACGATATCGCCTGTTACAAGTTCAATTAAAGAAACTGGACGAGTCAGATCAAGAGGATTACATACAGTTGCTTCAATCACTTT CTTCCGTTGAGCTTAGCAGACATGCAGTGGAGTTGGAAAAGCGATCGATTCAGCTTTCCTTCGAAGAAGCGAAAGAGATACAGCGGGTGGCGTTCCTGAA CGTACTGGGGAGGAATCTGAAACCACCACCCTCAGTTCAACAGCTTCAGTCATCGAAATGA
AA sequence Show only first row Show all	>Lus10023933 pacid=23160759 polypeptide=Lus10023933 locus=Lus10023933.g ID=Lus10023933.BGIv1.0 annot-version=v1.0 MVQKMTSSEIGECMMGNTEPNSSGCDKQFPVAVKKAALRDVQNQNKSHNNSIAASSPLTKKGGQSMDTVKVSGTKRTSPESPVGHPCRNQSPNSNAANAQ LVYVRRKPEAEIAKNSGSDGTSLNSNSPIRHRFGHSAATTTNQLKSPANVPKFYRLSAFAPPIATGSTTSTSGKPSVSAPSSYHRFTCAVPFSDDGKGLK RTHWEERYRLLQVQLKKLDESDQEDYIQLLQSLSSVELSRHAVELEKRSIQLSFEEAKEIQRVAFLNVLGRNLKPPPSVQQLQSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45250			Integral membrane protein hemo...		Lus10023933 [exp]	0	1
AT3G51100			unknown protein		Lus10041813 [exp]	15.0	0.8281
AT1G16810			unknown protein		Lus10033383 [exp]	45.7	0.7657
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	51.9	0.7585
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	52.2	0.7587
AT1G52540			Protein kinase superfamily pro...		Lus10023130 [exp]	53.7	0.7656
AT5G08450			unknown protein		Lus10004299 [exp]	61.5	0.7564
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	63.2	0.7484
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	92.8	0.7595
AT5G19430			RING/U-box superfamily protein...		Lus10036034 [exp]	94.5	0.7434
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040727 [exp]	101.7	0.7531

Compare expression of checked genes

Lus10023933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.