Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17200 367 / 5e-121 DSK2 ubiquitin family protein (.1) AT2G17190 341 / 4e-111 ubiquitin family protein (.1) AT5G42220 67 / 3e-11 Ubiquitin-like superfamily protein (.1) AT5G25270 55 / 1e-07 Ubiquitin-like superfamily protein (.1) AT5G11080 52 / 5e-07 Ubiquitin-like superfamily protein (.1.2) AT1G23410 48 / 2e-06 Ribosomal protein S27a / Ubiquitin family protein (.1) AT3G52590 47 / 2e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 47 / 2e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G62250 47 / 4e-06 UBQ5 ubiquitin 5 (.1) AT2G47110 47 / 4e-06 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014433 [exp] 706 / 0 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10034563 [exp] 64 / 2e-10 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10040001 [exp] 58 / 1e-08 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 58 / 1e-08 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10021830 [exp] 54 / 4e-07 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10008873 [exp] 47 / 3e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030595 [exp] 47 / 6e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030894 [exp] 47 / 6e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 47 / 9e-06 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166000 [exp] 494 / 1e-170 AT2G17200 547 / 0.0 ubiquitin family protein (.1) Potri.004G205100 [exp] 369 / 1e-121 AT2G17200 425 / 3e-143 ubiquitin family protein (.1) Potri.005G100200 [exp] 318 / 3e-102 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.005G247900 [exp] 66 / 7e-11 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 60 / 3e-09 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 59 / 9e-09 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 57 / 3e-08 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.004G194000 [exp] 51 / 2e-07 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 47 / 2e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 47 / 2e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10023934 pacid=23160802 polypeptide=Lus10023934 locus=Lus10023934.g ID=Lus10023934.BGIv1.0 annot-version=v1.0 ATGGGAGGTGAAGGTGGTGATTCGACCAACTCGAAATTGGCCTCCTCAACCGGCGATGCCGATCAAGGCCAATCGGAGGATTTGGTGGCGGTCAATGTCC GGTGCTCGAACGGGACCAAGTTCACGGTCAGGACTGCGCTTGAATCCACGGTGCAGGCTTTCAAAGCACTTTTGGCTCAGAATTGCGATGTCCCAGCTGA GCAGCAGCGCCTGATTTACAAGGGTCGCATCCTCAAGGACGACCAAACCCTCGTGAGCTATGGTTTACAGGCTGATCACACAGTCCATATGGTTCGTGGT TTTGCTCCAGCTTCATCAACCCCTGGATCTTCTCCTGCACCTGCACCAGCAGCTAATCCTGCAAGTCAGAATGCTGCGCCTGGTGTTACGAGGGGAGTTG GCTCCAATGAAGGAGGGCCCTTTGGTGGTGCTGGTATTGGATCACCTCTGTTTCCTGGACTTGGATTCAATGCCCTTGGTGGTGGCACTAGCGGGTCAGC TAATTTGTTTGGAACTGGGCTTCCAGAGTTTGAACAAGTGCAACAGCAACTGACACAGAACCCAAACATGATGAGGGACATAATGAATATGCCTGCTATT CAGAGCATGATGAACAATCCTGAGTTGATGCGGAGCTTAATTATGAGCAATCCTCAAATGCGTGACATCATTGACAGGAATCCTGAGCTTGGGCATGTGC TCAATGACCCTAGCGTTCTCCGCCAGACACTAGAAGCTGCAAGGAACCCAGAGCTCATGCGTGAGATGATGAGAAACACTGATCGTGCTATGAGCAATAT TGAAGCTTCTCCTGAGGGATTTAACATGCTCAGGCGCATGTATGAAAATGTCCAAGAACCATTTCTTAATGCAACTACAATGGGCACTAATACCGGAAAC AATCCAAATCCCAACCCTTTTGCTGCACTTCTTGCAAACCAGGGTGGGACACAAACCAGGGATGCATCAAACAACTCTTCAACCACTGGTACAGAAACAA CCCCTGGGTTAACTGTTCCAAATTCAAACCCGCTGCCTAATCCATGGAGCAATACTACAGGCGGAACTCAGACAAACCCCCCAACAAGGTTAATTCCTGC TGCTGGAGATCCCAGGGCAACTGGTCTTGCTGGCTTGGGAGGGCTCGGTCTCCCAGGAATGGAACAATTGATGGGCGGTGGTATGCCGGATGCTGCTAAT TTGAATCAGTTGATGCAGAATCCAGCTATGTCACAGATGATGCAAAATTTGCTTTCCAACCCTGAGTACATGAACCAGATGCTAACCCTGCAGCAGTCTC TTCTTTCTCAGCTCAACCGGCAGCAGACAACCCCGGATTCTGCACAGACTGGTACCACTCCAGGAACTCCCAATACTGCTAATTTGGAGTTGCTAATGAA CATGTTTGGTGGTCTTGGTGCTGGCGGCTTATCTGCTCCGAACCAACCAGACGTGCCACCAGAAGAGCTGTATGCGACTCAACTTTCACAGCTCCAAGAG ATGGGTTTCTTCGATACCCAGGAGAATATTCGAGCATTGCGTGCTACTGCTGGGAATGTCCATGCTGCAGTGGAGCGACTACTAGGAAATCTTGGACAAT AG
AA sequence Show only first row Show all	>Lus10023934 pacid=23160802 polypeptide=Lus10023934 locus=Lus10023934.g ID=Lus10023934.BGIv1.0 annot-version=v1.0 MGGEGGDSTNSKLASSTGDADQGQSEDLVAVNVRCSNGTKFTVRTALESTVQAFKALLAQNCDVPAEQQRLIYKGRILKDDQTLVSYGLQADHTVHMVRG FAPASSTPGSSPAPAPAANPASQNAAPGVTRGVGSNEGGPFGGAGIGSPLFPGLGFNALGGGTSGSANLFGTGLPEFEQVQQQLTQNPNMMRDIMNMPAI QSMMNNPELMRSLIMSNPQMRDIIDRNPELGHVLNDPSVLRQTLEAARNPELMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMGTNTGN NPNPNPFAALLANQGGTQTRDASNNSSTTGTETTPGLTVPNSNPLPNPWSNTTGGTQTNPPTRLIPAAGDPRATGLAGLGGLGLPGMEQLMGGGMPDAAN LNQLMQNPAMSQMMQNLLSNPEYMNQMLTLQQSLLSQLNRQQTTPDSAQTGTTPGTPNTANLELLMNMFGGLGAGGLSAPNQPDVPPEELYATQLSQLQE MGFFDTQENIRALRATAGNVHAAVERLLGNLGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	0	1
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	1.4	0.8260
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	3.2	0.8102
AT3G14470			NB-ARC domain-containing disea...		Lus10005218 [exp]	4.7	0.7882
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	5.5	0.7846
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	5.9	0.7978
AT4G01290			unknown protein		Lus10036389 [exp]	6.9	0.7968
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	7.2	0.8084
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	7.7	0.8019
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	8.7	0.7813
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	8.7	0.8030

Compare expression of checked genes

Lus10023934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.