Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38370 305 / 2e-105 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014434 [exp] 431 / 4e-155 AT4G38370 322 / 7e-113 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165400 [exp] 346 / 9e-122 AT4G38370 330 / 6e-116 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10023935 pacid=23160667 polypeptide=Lus10023935 locus=Lus10023935.g ID=Lus10023935.BGIv1.0 annot-version=v1.0 ATGGAGCCTGCATTTCTGAAGAACAAATACTGGGTGCTGAGGCATGGGAAGAGTATTCCAAATGAGAAAGGAATCATCGTTTCATCCATGGAGAATGGCA TTCGTCCAGAATACCAACTGGCAGAGGAAGGCATTGGTCAGGCACAGTTGGCTGGAGAACTGTTCCTTAAGGTGTTTATATGGATCTTTGCATTCAAGCA ACTCATTTTCTCCTTCCGGGCTTCTCTTTCCGAAGCTGAGCTATTTCGATGGATGCAGGAACTGAAGGAAAACAGCATTCCACTTGATAGAGTGATAATC TGCTACTCTCCATTTGCAAGAACAAGCCACACTGCTAAAGTTGCTGTCTCAGCTTTAGGCATTCCGTTTGAAGGCCCTCAATGCAAGGTGATTGAAGATC TCAGGGAACGTTACTTCGGTCCTTCTTTCGAGCTGATGTCGCACGATAAGTATGCGGAGATATGGGCACTTGATGAGAAAGACCCGTTCATGCAACCAGA AGGTGGAGAAAGTGTGAATGATGTTGCTACAAGGCTTTCTAGTGTGATTGCAAGGATTGAATCCGAATTCGAGAAATCAGCAGTCTTGGTGGTTAGCCAT GGGGATCCCTTGCAAATATTGCAGACGATACTCCACGCAGCCAAACAAGTGACGGAATCAACTGATGGTGGTGACATTTCGTCGAGGATGCAGGCAGTTA GAGTTCCTTCTGTATTGTCCCAGCACCGGAAGTTTGCCTTACAGACCGGAGAACTGCGAGGAGTCATAAAGTTTGACAGAGAACACTAG
AA sequence Show only first row Show all	>Lus10023935 pacid=23160667 polypeptide=Lus10023935 locus=Lus10023935.g ID=Lus10023935.BGIv1.0 annot-version=v1.0 MEPAFLKNKYWVLRHGKSIPNEKGIIVSSMENGIRPEYQLAEEGIGQAQLAGELFLKVFIWIFAFKQLIFSFRASLSEAELFRWMQELKENSIPLDRVII CYSPFARTSHTAKVAVSALGIPFEGPQCKVIEDLRERYFGPSFELMSHDKYAEIWALDEKDPFMQPEGGESVNDVATRLSSVIARIESEFEKSAVLVVSH GDPLQILQTILHAAKQVTESTDGGDISSRMQAVRVPSVLSQHRKFALQTGELRGVIKFDREH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	0	1
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10038195 [exp]	1.7	0.7818
AT5G61310			Cytochrome c oxidase subunit V...		Lus10040012 [exp]	2.0	0.7789
AT5G20180			Ribosomal protein L36 (.1.2)		Lus10019412 [exp]	2.4	0.7942
					Lus10030382 [exp]	6.0	0.7578
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	7.6	0.7862
AT2G37120			S1FA-like DNA-binding protein ...		Lus10015073 [exp]	8.8	0.7520
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	8.8	0.7675
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	8.9	0.7699
AT4G38280			unknown protein		Lus10022622 [exp]	13.5	0.7213
AT5G40080			Mitochondrial ribosomal protei...		Lus10034241 [exp]	13.7	0.7188

Compare expression of checked genes

Lus10023935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.