Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17980 993 / 0 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G31740 235 / 2e-74 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G36100 150 / 2e-41 Sec1/munc18-like (SM) proteins superfamily (.1) AT1G12360 96 / 2e-20 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 94 / 1e-19 SEC1A secretory 1A (.1.2) AT4G12120 92 / 3e-19 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 90 / 1e-18 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT3G54860 46 / 7e-05 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014435 [exp] 1222 / 0 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10024558 [exp] 93 / 2e-19 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10032196 [exp] 88 / 5e-18 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10028622 [exp] 87 / 1e-17 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10018921 [exp] 86 / 2e-17 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10015870 [exp] 86 / 3e-17 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 79 / 3e-15 AT1G02010 868 / 0.0 secretory 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G204400 [exp] 1105 / 0 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 1071 / 0 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 100 / 8e-22 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.003G115800 [exp] 95 / 3e-20 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.014G069300 [exp] 92 / 2e-19 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.005G188000 [exp] 87 / 6e-18 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 84 / 7e-17 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.010G226600 [exp] 50 / 5e-06 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 46 / 6e-05 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10023936 pacid=23160726 polypeptide=Lus10023936 locus=Lus10023936.g ID=Lus10023936.BGIv1.0 annot-version=v1.0 ATGTTGAATCTGAACCAACCTGTGAATGCAACGGGTACCGCAAACGAAGAGGTATACAAGATCTTGATCTACGATAAGTTCTGCCAGAACATTCTCTCCC CATTGATCCACGTCAAGGATCTGAGGAAGCACGGCGTGACACTCTACTTCCTGATCGACAAAGATCGAAAGCCAGTCCACGATGTGCCAGCTGTGTACTT TATCCAACCAAGTCAACCAAACATCCAACGCATCATCGCCGATGCCTCCCGTGGACTGTACGACAGCTTACATTTGAACTTCTCGTCATCAATAGCGAGG CCTTTGCTTGAAGATCTTGCTTCGGGGACTCTAGGTTCAGAGTCCATCCAGAGGGTTGCCAAGGTTCATGATCAGTACTTGGAGTTTGTGACATTGGAAG ATGGATTGTTCTCGTTGGCACAGAAGGCATGTTATGTACAGTTGAATGATCCTTCAGCTGGGGATAAAGAGATTGAGGAGATCATTGAGAGGATTGTTAG TGGACTCTTCTGTGTGTTAGCCACATTGGCTGTTGTGCCGGTTATTAGGTGTCAACGAGGAGGACCTGCCGAGATGGTGGCTTCAGCGTTGGATCAGAAG CTGAGGGATCACTTGTTGGCAAAGAACAATTTGTTTACTGAAGGTGGAAGCTTTATGAGTTCTTTTCAGAGGCCGATTCTGTGCTTGTTCGATAGGAATT TCGAGCTTGCGGTTGGGATACAGCATGATTTCAGGTACTGTCCGCTTGTTCATGATGTTCTTGGGTTGAGGCTTAATAGGTTGAGTGTGCAAGGGGAAAA AGGCGGCATGAGGTCGTATGAGTTGGATAGTTCTGATCCATTCTGGCTTGCGAATGGATCGTTAGAGTTCCCTGAAGTTGCTGTCGAGATCGAAACCCAG TTGAATAAGTACAAGAAGGATGTCGATGAGGTGAATAGAAGGACCGGTGGAACAGATGGTCCTGAGTTTGAAGGAACAGACTTGATTGGGAACACAAAGC ATTTGATGAATGCTGTCAACTCACTCCCTGAGTTGACCGAGCGAAAGCAAGTGATTGATAAGCATACCAACATCGCAACTGTGTTACTCGGTGAGATCAA GGAGAGGTCTCTCGATTCCTACGCGAAAAAGGAGAATGACATGATGATCAGAGGAGGAAACATTGACCGTAGCGAAATCATGGCTGTTCTTAAAGGAAAA GGAAGTAAAATGGACAAACTGAGATTTGCAATCATCTACCTCATATCTTCAGAAACCATTAACCAACAAGAGGTGGAGCTAGTCGAAGCAGCTCTGAAGG AATCCGAGGTTGACACATGTGCATTCCAGTACGTCAAGAAAATCAAGTCCCTGAATGTCCAATTGGCAACTGCGAATTCGGCCAGTACAAGTAACATTGT AGATTGGGCTGAAAAGCTGTACGGACAGTCACTAAGCGCCGTCACTGCTGGTGTGAAGAACTTGCTATCGGGAGACAGGCAACTCGCTCTAACCAGGACG GTAGAAGCCTTAATGGAAGGGAAACCAAACCCTGAAATCGATTCCTACCTCGTGTTCGACCCTCGTGCACCCAAGTCAAGCTCTGGAGCAGGCCATATGA AAGGACCGTTCAAAGAAGCGATTGTGTTTATGGTAGGTGGAGGAAACTATGTCGAATATGGAGGCTTGCAGGAACTTGCACAACGTCAGCAGCCTGTGAA GCATATTATCTATGGCACAACAGAGATTCTAACCGGGGAGGAGTTTGTCGGGCAGCTTACTCTGTTGGGGCAAAAGATGGGTTTGGGTGGCGGAATTACT CCACCTCCAACTCAATAG
AA sequence Show only first row Show all	>Lus10023936 pacid=23160726 polypeptide=Lus10023936 locus=Lus10023936.g ID=Lus10023936.BGIv1.0 annot-version=v1.0 MLNLNQPVNATGTANEEVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFIQPSQPNIQRIIADASRGLYDSLHLNFSSSIAR PLLEDLASGTLGSESIQRVAKVHDQYLEFVTLEDGLFSLAQKACYVQLNDPSAGDKEIEEIIERIVSGLFCVLATLAVVPVIRCQRGGPAEMVASALDQK LRDHLLAKNNLFTEGGSFMSSFQRPILCLFDRNFELAVGIQHDFRYCPLVHDVLGLRLNRLSVQGEKGGMRSYELDSSDPFWLANGSLEFPEVAVEIETQ LNKYKKDVDEVNRRTGGTDGPEFEGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGNIDRSEIMAVLKGK GSKMDKLRFAIIYLISSETINQQEVELVEAALKESEVDTCAFQYVKKIKSLNVQLATANSASTSNIVDWAEKLYGQSLSAVTAGVKNLLSGDRQLALTRT VEALMEGKPNPEIDSYLVFDPRAPKSSSGAGHMKGPFKEAIVFMVGGGNYVEYGGLQELAQRQQPVKHIIYGTTEILTGEEFVGQLTLLGQKMGLGGGIT PPPTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	0	1
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	1.0	0.9694
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	1.7	0.9400
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	2.0	0.9444
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	3.2	0.9391
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	4.6	0.9222
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	4.9	0.9393
AT3G16200			unknown protein		Lus10037579 [exp]	5.5	0.9131
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	8.1	0.9235
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	8.5	0.9133
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	10.0	0.8988

Compare expression of checked genes

Lus10023936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.