Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35260 522 / 0 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 507 / 0 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 504 / 0 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT5G03290 291 / 2e-97 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 278 / 6e-92 IDH-VI isocitrate dehydrogenase VI (.1) AT1G32480 245 / 3e-81 IDH-IV isocitrate dehydrogenase IV (.1) AT5G14200 96 / 4e-22 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G80560 92 / 6e-21 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G31180 92 / 9e-21 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014436 [exp] 591 / 0 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 526 / 0 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10041824 [exp] 524 / 0 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023192 [exp] 286 / 4e-95 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 285 / 5e-95 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 282 / 1e-93 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 278 / 4e-92 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10030344 [exp] 95 / 1e-21 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 87 / 4e-19 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099600 [exp] 524 / 0 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 521 / 0 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 521 / 0 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 514 / 0 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.006G126700 [exp] 288 / 4e-96 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 287 / 1e-95 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.001G185600 [exp] 90 / 5e-20 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023937 pacid=23160663 polypeptide=Lus10023937 locus=Lus10023937.g ID=Lus10023937.BGIv1.0 annot-version=v1.0 ATGGAGGCGATGCACGCGCCGGTTTTCTTCGAGAAGTACGAGGTTCGTGGGGACATGAAGCAGTTCCCTCCCGAGGTCCTGGAATCCATCAAGAGAAACA AGGTGTGCATAAAGGGAGGGCTGATGACGCCGATGGGAGGAGGGGTGAGCTCGCTGAACGTGCAGTTGAGGAAAGAGCTGGACCTATACGCGTCGCTGGT GAACTGCAGGAACATGCCAGGGCTGCCGATTCGACACGAGAAGGTGGACATCGTGGTGGTGAGGGAGAACACCGAAGGAGAGTACGCTGGCCTTGAGCAT GAGGTGGTTCCTGGCGTTGTTGAGAGTCTTAAGGTGATTACAAAGCACTGCTCGGATAGGATCGCAGAGTACGCATTCGAGTATGCGTACTTGAACAACA GGAAGAAGGTGACGGCGGGGCACAAGGCAAACATCATGAAGCTTGCCGACGGCCTGTTTTTGGAGTCATGCCGTGAGGTCGCCCAGAAGTATCCTGCCAT CGCCTACAACGAGATCATCGTCGACAATTGCTGCATGCAGCTCGTCTCGAGGCCCGAGCAGTTCGACGTTATGGTCACCCCAAATCTGTACGGAAACCTA GTAGCAAACACCGCAGCCGGCATCGCTGGAGGCACAGGCTTCATGCCCGGAGGAAATGTGGGAGCGGACCACGCAGTATTCGAGCAAGGAGCCTCGGCTG GAAACACGGGGAACGATAAAATATTGTCGCAAAAGATGGCGAACCCGGTGGCTCTGCTCCTCTCGTCGGCTATGATGTTGAGGCATCTCCAGTTCCCTTC TTTTGCTGACAGGCTCGAAACGGCCGTCGGCAAAATGATTTTGGAAGGGAAATATCTTACCAAGGACCTCGGCGGCGACAGCTCGACTCAAGAAGTAGTC GACGCTGTCCTCGCCAACCTTGAATGA
AA sequence Show only first row Show all	>Lus10023937 pacid=23160663 polypeptide=Lus10023937 locus=Lus10023937.g ID=Lus10023937.BGIv1.0 annot-version=v1.0 MEAMHAPVFFEKYEVRGDMKQFPPEVLESIKRNKVCIKGGLMTPMGGGVSSLNVQLRKELDLYASLVNCRNMPGLPIRHEKVDIVVVRENTEGEYAGLEH EVVPGVVESLKVITKHCSDRIAEYAFEYAYLNNRKKVTAGHKANIMKLADGLFLESCREVAQKYPAIAYNEIIVDNCCMQLVSRPEQFDVMVTPNLYGNL VANTAAGIAGGTGFMPGGNVGADHAVFEQGASAGNTGNDKILSQKMANPVALLLSSAMMLRHLQFPSFADRLETAVGKMILEGKYLTKDLGGDSSTQEVV DAVLANLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10023937 [exp]	0	1
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10001829 [exp]	5.1	1.0000
AT5G22450			unknown protein		Lus10000530 [exp]	7.1	1.0000
					Lus10011642 [exp]	11.5	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	12.2	1.0000
					Lus10022214 [exp]	12.4	1.0000
					Lus10011078 [exp]	13.9	1.0000
					Lus10011425 [exp]	15.5	1.0000
					Lus10027991 [exp]	17.3	1.0000
					Lus10022518 [exp]	17.7	1.0000
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10013028 [exp]	17.9	1.0000

Compare expression of checked genes

Lus10023937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.