Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36800 164 / 1e-48 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36790 157 / 4e-46 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36780 153 / 1e-44 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 152 / 5e-44 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 152 / 5e-44 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36750 148 / 9e-43 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT3G53160 122 / 8e-33 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 116 / 7e-31 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT4G34131 97 / 9e-24 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 92 / 1e-22 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014437 [exp] 311 / 2e-105 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 194 / 4e-60 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10012011 [exp] 194 / 4e-60 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10016268 [exp] 194 / 5e-60 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 182 / 2e-55 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10023939 [exp] 156 / 9e-46 AT2G36780 485 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 120 / 3e-32 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10022628 [exp] 114 / 3e-30 AT2G36780 310 / 1e-101 UDP-Glycosyltransferase superfamily protein (.1) Lus10014401 [exp] 108 / 7e-28 AT3G53150 537 / 0.0 UDP-glucosyl transferase 73D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 159 / 9e-47 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 135 / 5e-38 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 129 / 2e-35 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G303000 [exp] 112 / 2e-29 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 112 / 3e-29 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 110 / 1e-28 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303700 [exp] 109 / 2e-28 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302300 [exp] 109 / 2e-28 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 105 / 6e-27 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 101 / 2e-25 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023938 pacid=23160736 polypeptide=Lus10023938 locus=Lus10023938.g ID=Lus10023938.BGIv1.0 annot-version=v1.0 ATGGTCGACATCGCCGAACTCCTCGCCACCCCCACAAATCCTCGTTACTACGTCCACGTCACCATCGTCACAACACCTCTGAACGCAGCCTGGTTCGCCA CCCCTCTCGCTCGAGCCAACGAAAACCTCCACATCCCCATCAACTTAGTCCAATTCCGGTTCCCCTGCACCGAAGCAGGGCTCCCCGAAAACTGGGAGAA CTGCGACATGCTCCCTTCGTTGGAATCGATCGTCGGGATCTTCCAGGCTGCCTCGTTGATAGAACCGGATGTCGTTTTCTTATTCGAGAAGCTGGAGCCG AGGCCCACGTGCATCATCTCCGATTTCTGCTTGCCTTACACCAACAACGTCGCGAAGAAGTTCAACGTTCCGAGGATTAGCTTCCATGGGTTTAGCTGTT TCTGCCTCGCGTGCTTGCATTGCATTAAGCTTCACGAGGAAGAAGTAGACCGGAGAGTTGGCTCCGATTTCGACTCGTTCCTCGTTCCCGGATTCCCCGG TGGGATCCGGTTCACCAAGGCTTAG
AA sequence Show only first row Show all	>Lus10023938 pacid=23160736 polypeptide=Lus10023938 locus=Lus10023938.g ID=Lus10023938.BGIv1.0 annot-version=v1.0 MVDIAELLATPTNPRYYVHVTIVTTPLNAAWFATPLARANENLHIPINLVQFRFPCTEAGLPENWENCDMLPSLESIVGIFQAASLIEPDVVFLFEKLEP RPTCIISDFCLPYTNNVAKKFNVPRISFHGFSCFCLACLHCIKLHEEEVDRRVGSDFDSFLVPGFPGGIRFTKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10023938 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	3.6	0.8756
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	6.0	0.8713
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	7.3	0.8680
					Lus10021453 [exp]	8.7	0.8349
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10037409 [exp]	8.8	0.7027
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	9.8	0.8456
					Lus10015218 [exp]	12.5	0.8324
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	12.7	0.8296
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	13.0	0.8217
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	13.6	0.8296

Compare expression of checked genes

Lus10023938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.