Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 457 / 6e-158 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 450 / 4e-155 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 442 / 5e-152 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36800 433 / 3e-148 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36750 432 / 5e-148 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 426 / 2e-145 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 409 / 7e-139 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 350 / 1e-115 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15480 333 / 3e-109 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 328 / 1e-107 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016268 [exp] 513 / 2e-179 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 500 / 3e-174 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 499 / 3e-174 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 471 / 6e-163 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10003322 [exp] 468 / 7e-162 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 404 / 5e-137 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10023894 [exp] 404 / 2e-136 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 397 / 3e-134 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10014404 [exp] 395 / 4e-133 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 424 / 6e-145 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 415 / 2e-141 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 402 / 2e-135 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G303000 [exp] 368 / 7e-123 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 363 / 5e-121 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 362 / 2e-120 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302300 [exp] 359 / 1e-119 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 358 / 2e-119 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098400 [exp] 357 / 1e-118 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 356 / 2e-118 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10023939 pacid=23160787 polypeptide=Lus10023939 locus=Lus10023939.g ID=Lus10023939.BGIv1.0 annot-version=v1.0 ATGGATTCACCGGCACTCCATTTCGTCCTCTTCCCCTTCATGGCGCAAGGCCACATGGTCCCCATGATCGACATCGCCAAGCTCCTAGCCCAACGCGGAC TCCAAGTCTCCATCGTCACAACTCCGGTCAACGCTGCCCGATTCAACTCCCAAATCCGACGCCTAACCTCCCTCAAAATCGAGCTCTTCCAGCTCGATTT CCCCTGCTCCGAAGCAGGGCTCCCCGCCGGCTGCGAATCCTTCGACCTCCTCCCTTCTCATGACCTAGCGATCAACTTCTTCACCGCCGCCGCTATGATG GAGAATCAAGCTGAAACTCTCCTCACCGAGCTATCCCCGCCGCCGAGCTGTATCGTTTCGGATATCAGCCTGCCGTACACTGCCAACCTAGCTGCCAAAT TCGGAATCCCTAGAATCAGCTTCCATGGATTCAGCTGTATGTGTTTGCTGTGCGTTCGGTTGATCTGCCTCCATGCGGACGAGATTCAAAAAGACGTACC TTCTGATTCGGACTACTTCGTACTGCCGAAATTTCCCGACGATCGGATCAGGTTCACGAAACTTCAATTGCCGATGTCGGTGACTAAGGAGACCAAAGGA ATTGGAGCTCAGATGCTGAAAGTCGAATCGGAAGCTTACGGAGTGATTATGAACAGCTTCCATGATTTGGAAGAGAAGTACATCGCGGAGCTGAAGAAAG GAAATGGCGGAAATGGAAGGATCTGGTGCGCCGGTCCAGTTTCGTTAACCAATAGTGACGAATTGGACAAATTACAGAGAGGTGGTGGAGAAGGGGATGG TCGCGAACTCGTCGGTTGGCTCGATTTGAAGGATTCACGTTCGGTCATATACGTGTGTTTCGGTTCGATCTGTAATCTCACATTCGAGCAGCTAACCGAG CTGGCTCTCGGGTTAGAAGCGTCGAATCGGGATTTTGTATGGGCGATCAGAGTGAAATCAGACCGAAACTATGTAGACTTCAACAATTGGGCAGTTGAGA GCGGATTTGAAGATAGGATCTCTGGGACTAGAAGGGGCCTCCTGATTCGAGGATGGGCACCGCAGGTACTGATACTGTCACATCCTGCTGTGGGAGGGTT CATGACGCATTGTGGGTGGAACTCGACTATTGAAGGGATTAGCGCAGGAATTCCGATGATTACGTGGCCTTTGTTTGGGGACCAGTTTTGTAACCAGAAG TTGATCGTAGAAGTTTTGGGAGTTGGAGTAGGAGTTGGAGTGGAGAAGCCGACGATGGAGAACTGGAAGGAAGTGACGACGGAGGTGGTGAAGAGTGTAG ATGTGGCTCAAGCGGTGGAAGTGACATTGAGCGGTGGAGCAGAGGGAGAAGAGAGAAGGAGAAAAGCGGTTGAGATTGCGAAGATGGCAAGACATGCTGT AAAGAATGGTGGATCGTCGTATGAAGATATTACAAGGTTGATAGAGGAAATAAAAACATTTCATGTTGCATGA
AA sequence Show only first row Show all	>Lus10023939 pacid=23160787 polypeptide=Lus10023939 locus=Lus10023939.g ID=Lus10023939.BGIv1.0 annot-version=v1.0 MDSPALHFVLFPFMAQGHMVPMIDIAKLLAQRGLQVSIVTTPVNAARFNSQIRRLTSLKIELFQLDFPCSEAGLPAGCESFDLLPSHDLAINFFTAAAMM ENQAETLLTELSPPPSCIVSDISLPYTANLAAKFGIPRISFHGFSCMCLLCVRLICLHADEIQKDVPSDSDYFVLPKFPDDRIRFTKLQLPMSVTKETKG IGAQMLKVESEAYGVIMNSFHDLEEKYIAELKKGNGGNGRIWCAGPVSLTNSDELDKLQRGGGEGDGRELVGWLDLKDSRSVIYVCFGSICNLTFEQLTE LALGLEASNRDFVWAIRVKSDRNYVDFNNWAVESGFEDRISGTRRGLLIRGWAPQVLILSHPAVGGFMTHCGWNSTIEGISAGIPMITWPLFGDQFCNQK LIVEVLGVGVGVGVEKPTMENWKEVTTEVVKSVDVAQAVEVTLSGGAEGEERRRKAVEIAKMARHAVKNGGSSYEDITRLIEEIKTFHVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	1.0	0.8768
AT3G07870			F-box and associated interacti...		Lus10012355 [exp]	2.0	0.8472
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	2.4	0.8685
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	3.5	0.8622
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	7.5	0.8308
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	7.7	0.8396
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	9.4	0.8198
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	10.9	0.8340
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	11.6	0.8068
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	11.8	0.8112

Compare expression of checked genes

Lus10023939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.