Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 360 / 6e-119 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 274 / 2e-86 Flavin-binding monooxygenase family protein (.1) AT1G12140 57 / 2e-08 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT5G61290 57 / 2e-08 Flavin-binding monooxygenase family protein (.1) AT1G12200 56 / 4e-08 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT5G07800 53 / 3e-07 Flavin-binding monooxygenase family protein (.1) AT1G63340 52 / 5e-07 Flavin-containing monooxygenase family protein (.1) AT1G12130 52 / 9e-07 Flavin-binding monooxygenase family protein (.1) AT1G63370 52 / 9e-07 Flavin-binding monooxygenase family protein (.1) AT1G62570 52 / 9e-07 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023941 [exp] 642 / 0 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10014439 [exp] 493 / 5e-172 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 464 / 2e-159 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 457 / 2e-159 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10038126 [exp] 369 / 2e-122 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 368 / 5e-122 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 363 / 3e-120 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10030750 [exp] 216 / 2e-66 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1) Lus10008454 [exp] 134 / 7e-35 AT1G19250 71 / 3e-13 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143500 [exp] 709 / 0 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 535 / 0 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 525 / 0 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 489 / 1e-169 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 402 / 5e-137 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 375 / 8e-125 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 369 / 4e-122 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.012G067500 [exp] 61 / 8e-10 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121100 [exp] 57 / 1e-08 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.013G019900 [exp] 53 / 3e-07 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10023940 pacid=23160829 polypeptide=Lus10023940 locus=Lus10023940.g ID=Lus10023940.BGIv1.0 annot-version=v1.0 ATGGCGGATAACAAACGCATAGCCATAATCGGAGCAGGAATCAGCGGCTTGCTAGCCTGCAAGTACGCCCTCTCCAAGAACTTGCACCCCATAGTGTTCG AATCCCGAACCGACGTTGGGGGGCTCTGGACAAGCACCCTCTCCAGCACCAAGCTCCAAACCCCCAAACCAATCTTCCAGTTCTCCGACTTCCCATGGCC GGACTCCGTCACCGACGACTTCCCGGCCCACGACCAAGTCCTCGACTACTTGAAGTCGTACTCGAAGCACTTCGGCCTCACCAAGTACATCCAGCTCAAC ACCAAAGTGGTTGGGATCAACTACAGAGGCGTAACAGAGCAGGAGATGGAAGCGTGGAGCTCATGGGGAGGAAACGGCGACGTTTTTAGCTCCAGAGGGA GATGGGAAGTAGAAGTCTCCAGAAATGGGAGTTCTGAAACTGAAGTGTACGAAGTTGGGTTTGTGATTATCTGTGTGGGAAAGTACAGTGATGTCCCCAA CATTCCGGAGTTTGCGCCGGGGAAGGGACCGGAGGTGTTTCAGGGGAGAGTGATGCATTCGATGGAGTATTCTGATCTGGGTGCTGAGGAAGCTGGGAAG GTGGTGAAGGGGAAGAGAGTCGCTGTTGTTGGGTTGCAGAAGCATGCTCTGGATATTGCCATGGAGTGCTCTGCTATCAATGGGAAGGAGAATCCTTGCA GAGTGGTGTACAGAAGAGAGCACTGGAACGTACCTGATTACATGCCATGGGGTTTCCCACTGGCGAAACTCTACCTCAACAGGTTTTCAGAGCTATTGGT TCACAAACCTGGAGAAGGCATCCTGCTCAGCTTCTTGGCCACCATTTTGGCCCCACTTAGGTGGGCGATCTCCAAGTTTGTCGAAAGCGACATCAAGCAC AAGCACCAGTTAGTGAAACATGCGATGCTTCCGAACCACAGCTTTCTTCAGGAGGTAAGTTCGTGCTTGATCTCGACGGTTCCTGAGAAATTCTACGACA GGGTCGATGAGGGAAGCATCAAGTTGACCAAAGCTCCGAGCTTTAGCTTCTGCAAGGAAGGGGTCGTGGTCGAAGGTCGTGTCGACGAGCAGAAGCCATT GGAAACGGACCTTGTGATATTGGCTACAGGTTTCAAGGGTGAAAAGAAGCTGCAAGATGTCTTTGGATCAAAACATTTCAGAAAAATCATCGTCGGCTCC TCTGACACCGCCGTTCCTCTCTACAGGAATTGCATTTCACCGCGAATTCCACAGCTAGCGGTGCTGGGATTCTCGGAGAGCATCTCGAACCTGTTCACGT CGGAGATGAGGTGCCGGTGGCTGGCGGAGCTTCTGGACGGCAAGTTCAAGCTGCCGGAGATCAAGGAGATGGAAAAAGAAGCGTCAAGGTGGGACAAGTA TCTCAAGGAGTACTTAGGCGACAACTACAAGAGATCGTGCATCGGAGCAATCCATATTTGGCACAACGACCTGCTTTGCAAGGACATGGGCTGGAACCCA AGAAGGAAGAGTGGCATTTGGGCTGAGTTGTTTGAGCCTTACGGCCCACTGGACTACGTCTCCCCCTGA
AA sequence Show only first row Show all	>Lus10023940 pacid=23160829 polypeptide=Lus10023940 locus=Lus10023940.g ID=Lus10023940.BGIv1.0 annot-version=v1.0 MADNKRIAIIGAGISGLLACKYALSKNLHPIVFESRTDVGGLWTSTLSSTKLQTPKPIFQFSDFPWPDSVTDDFPAHDQVLDYLKSYSKHFGLTKYIQLN TKVVGINYRGVTEQEMEAWSSWGGNGDVFSSRGRWEVEVSRNGSSETEVYEVGFVIICVGKYSDVPNIPEFAPGKGPEVFQGRVMHSMEYSDLGAEEAGK VVKGKRVAVVGLQKHALDIAMECSAINGKENPCRVVYRREHWNVPDYMPWGFPLAKLYLNRFSELLVHKPGEGILLSFLATILAPLRWAISKFVESDIKH KHQLVKHAMLPNHSFLQEVSSCLISTVPEKFYDRVDEGSIKLTKAPSFSFCKEGVVVEGRVDEQKPLETDLVILATGFKGEKKLQDVFGSKHFRKIIVGS SDTAVPLYRNCISPRIPQLAVLGFSESISNLFTSEMRCRWLAELLDGKFKLPEIKEMEKEASRWDKYLKEYLGDNYKRSCIGAIHIWHNDLLCKDMGWNP RRKSGIWAELFEPYGPLDYVSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10023940 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10023941 [exp]	1.0	0.9596
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037985 [exp]	15.5	0.7488
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10014376 [exp]	32.6	0.7723
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	35.8	0.7595
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	42.0	0.7360
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	53.2	0.7305
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004748 [exp]	64.9	0.7474
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	65.5	0.6945
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	83.0	0.7198
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	90.4	0.7174

Compare expression of checked genes

Lus10023940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.