Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 565 / 0 MATE efflux family protein (.1) AT2G38330 394 / 2e-131 MATE efflux family protein (.1) AT1G51340 328 / 4e-106 MATE efflux family protein (.1.2) AT3G08040 321 / 4e-103 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G21340 62 / 9e-10 MATE efflux family protein (.1.2) AT4G39030 58 / 1e-08 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014440 [exp] 977 / 0 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 890 / 0 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 795 / 0 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10020203 [exp] 397 / 5e-136 AT4G38380 174 / 3e-50 MATE efflux family protein (.1) Lus10012227 [exp] 389 / 8e-129 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 323 / 1e-103 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10026303 [exp] 312 / 1e-99 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 310 / 8e-99 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10016412 [exp] 311 / 9e-99 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 706 / 0 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 684 / 0 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 565 / 0 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 381 / 7e-126 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G053700 [exp] 333 / 1e-107 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 333 / 2e-107 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 328 / 4e-106 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G061100 [exp] 327 / 7e-105 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G122600 [exp] 75 / 7e-14 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.009G122900 [exp] 71 / 8e-13 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10023943 pacid=23160687 polypeptide=Lus10023943 locus=Lus10023943.g ID=Lus10023943.BGIv1.0 annot-version=v1.0 ATGAGTACCAATAGGCAGTTTGGCGGCGGTACGCTTTCTAGAGTAGTGACAGGTAGAACAAAACTTACACAGAGGTCTTCTTTCTGGGCTTCCCATAGTC TATCTGCCAAAGGATTTGGTTGGAGAGATGGTACTACGAGAAGTTACTTGTCTGCTGAGTATAGAGATCGATTGTCACCAGTAGTGACTCGTTGTAGGAC GCGAGATTCGGTGGTGGTTTATAATCAGTCAGCTTCAGACTATGGTATTGATTCTGCTGATGTAGAGGAGAGTTTGGAGTTAGAAGAAGGAGGTGTTGCC AATGGTTCTGCACATGAGACATTTGACGCTAATGGGGTTCCTGTTGAGAAGAAACCTCATCCTCCGAATGTTAAGTGTGAGCTGGCTATGCTGACATTGC CTGCGATTGGGGTACAAGCAATCGATCCTTTTGCGCAACTAATGGAGACTGCCTTTATTGGTAGAATAGGTTCGATCGAGTTAGGTTCAGCTGGTGTTGC CACTATGATCTTCAACAATATTTCCAAGCTACTCAACATTCCTCTTCTAAGTGTATCAACTTCTTTTGTTGCCGAGGACATTGCGAAGCATGCAGCCATT GATTCTACTGCAGCCGAAGAAGGCCGTACTAATGGCGCACTAGTCGATAAGGTGGTCAAGAGGAAGCAACTGGCTTCCGTGTCTACTGCATTACTGCTAG CCATTGGAATAGGAATCTTTGAGGCGACAGCTTTGTCCTTGGGACGTGGTCCATTTCTTGGCTTAATGGGTGTAACGCCGGGAACACCAATGCGAATCCC AGCAGAGAGATTTCTTTCAGTGAAGGCACTGGGAGCTCCTGCCGTTGTAATGTCTTTGGCTCTTCAAGGCATATTCCGTGGCTTCAAGGATACTAAGACT CCTCTTCTTTGCATAGGTCTTGGTAATTTGTCATTAGTGTTTCTGTTTCCTTTGCTGATGTATCAGCTTAAGTTAGGCGTCACTGGCGCAGCACTTGCAA CTGTCCTGTCTCAATATCTTGTGACCCTTTTAATGCTATGGAATCTCAATAAGAAGGTTGTACTACTGCCTCCGAGGATCGTAGATTTACAATTCGGTGT CTATATGAAGTCTGGTGGTTTCCTTATTGGAAGAACTCTGGCTGTTTTGACAACCATGACCTTGGCCACAGCCATGGCTGCTCGTCAAGGAACATTGGCC ATGGCAGGGCATCAAATATGCATGCAAGTTTGGTTGGCTGTGTCTCTACTTACCGATGCAGTAGCTTTGTCTGCCCAGGCTATGGTTGCGAGTTATTCAT CAAAACGTGATTATGTCAATGCAAGAGAAGTCACAAACTTGGTGTTGAAGGTTGGCTTATTCACAGGCCTTGCATTGGCTGCCATACTTGGCTTATCATT CGGCTCCATAGCCAAGTTGTTCACCGCAGATGCTGAATTACTACAGGTCGTAAACACCGGTGTATTGTTTGTTTGTGCCAGTCAACCTTTGAACGCTCTA GCTTATATCTTCGACGGCCTTCACTTTGGCGTCTCTGACTTCCCATATGCAGCCTGCTCGATGATGACGGTTGGAGCCATATGTTCAGTGTTTCTACTCT ACGTCCCTCGAATTCTCGGGCTTCATGGTGTTTGGTCAGGCTTGGCTCTTTTCATGGCCTTACGGACAGGAGCCGGAATCACAAGACTGATGCAGACATC GGGGCCTTGGTGGTTCTTACACAAGGACTTGCAGAGTTACCAGGTTGGTTAG
AA sequence Show only first row Show all	>Lus10023943 pacid=23160687 polypeptide=Lus10023943 locus=Lus10023943.g ID=Lus10023943.BGIv1.0 annot-version=v1.0 MSTNRQFGGGTLSRVVTGRTKLTQRSSFWASHSLSAKGFGWRDGTTRSYLSAEYRDRLSPVVTRCRTRDSVVVYNQSASDYGIDSADVEESLELEEGGVA NGSAHETFDANGVPVEKKPHPPNVKCELAMLTLPAIGVQAIDPFAQLMETAFIGRIGSIELGSAGVATMIFNNISKLLNIPLLSVSTSFVAEDIAKHAAI DSTAAEEGRTNGALVDKVVKRKQLASVSTALLLAIGIGIFEATALSLGRGPFLGLMGVTPGTPMRIPAERFLSVKALGAPAVVMSLALQGIFRGFKDTKT PLLCIGLGNLSLVFLFPLLMYQLKLGVTGAALATVLSQYLVTLLMLWNLNKKVVLLPPRIVDLQFGVYMKSGGFLIGRTLAVLTTMTLATAMAARQGTLA MAGHQICMQVWLAVSLLTDAVALSAQAMVASYSSKRDYVNAREVTNLVLKVGLFTGLALAAILGLSFGSIAKLFTADAELLQVVNTGVLFVCASQPLNAL AYIFDGLHFGVSDFPYAACSMMTVGAICSVFLLYVPRILGLHGVWSGLALFMALRTGAGITRLMQTSGPWWFLHKDLQSYQVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10023943 [exp]	0	1
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10024570 [exp]	20.3	0.8228
					Lus10029790 [exp]	27.8	0.8110
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10027006 [exp]	28.2	0.7458
AT1G60590			Pectin lyase-like superfamily ...		Lus10029140 [exp]	39.9	0.7561
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	53.5	0.7854
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	75.8	0.7898
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Lus10039140 [exp]	91.2	0.7848
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	130.8	0.7726
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	136.9	0.7832
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	169.1	0.7702

Compare expression of checked genes

Lus10023943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.