Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 153 / 2e-41 MATE efflux family protein (.1) AT2G38330 96 / 2e-21 MATE efflux family protein (.1) AT3G08040 83 / 5e-17 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 82 / 6e-17 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014441 [exp] 366 / 3e-118 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10020203 [exp] 316 / 6e-107 AT4G38380 174 / 3e-50 MATE efflux family protein (.1) Lus10014440 [exp] 323 / 2e-106 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 317 / 2e-103 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 287 / 5e-92 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10020205 [exp] 118 / 9e-32 AT4G38380 114 / 4e-30 MATE efflux family protein (.1) Lus10012227 [exp] 102 / 2e-23 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023942 [exp] 92 / 2e-20 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10014439 [exp] 87 / 2e-18 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 208 / 1e-61 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 207 / 3e-61 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 135 / 8e-35 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 87 / 1e-18 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G053700 [exp] 87 / 2e-18 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G053600 [exp] 85 / 7e-18 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 77 / 6e-15 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 69 / 1e-12 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023944 pacid=23160789 polypeptide=Lus10023944 locus=Lus10023944.g ID=Lus10023944.BGIv1.0 annot-version=v1.0 ATGCGAAATCACTTGTCTGCTGAGTATGGAGATCGACTGTCACCAGTGGTGACTCGTCGTAGGAGGCACGGTTCGGTGTTGCTTTATAATCAGTCAGCTT CGGGCCATGGGGTTGATTCTGCTGATGTAGAGGAGAGTTTCGAGTTAGAAGAAGGAGGTGTTACCAATGGTTCTGCACATGAGAAATTTGACGCTATAGG GGTTCCGGTTGAGAAGAGAACTCATCCTACGAAAGTTAAACGTTCGATCCAGCTGGGTTCAGCTGGTGTTGCCACTATTAACAATATTTCCAAGCTATTG AACATTCCTCTTCTAAGTGTATCAACTTATTTTGTTGGCGAGGACATTGCGAAGCATGCAGCCGTCGATTCTACTGCAGCCGAAGAAGGCCATACTAATG GTTCACTAACCGGTAAGGTGGTCAAGAGGAAGCAACTGACTTCCGTGTCTACTGCATTACTGCTAGCCATTGGAATAGGAATCTTTGAGGCGACAGTGTT GTCCTTGGGACGTGGTCCATTTCTTGGCTTGATGGGTGTAACACCGGGAACACCAATGCTAATCCAGCAGAGATTTCTTTCAGTAAAGGCACTGGGTGCT CCTGCCGTTGTAATGTCTTTGGCTCTTCATGGCATATTCCGCGACTTCAAGGATAATAAAACTTCTCTTTTTTGCATGGTGTTCCTTGGAACTTTCGTCC AGTTTGTTTGCACCAGTCAACCTTTGAATGCTCTAGCTTACATCTTCGATGGCCTCCACTTTGACGTCTCTGACTTCACGTATGCAGCCTGCTCGATGAT GACAGTTGGAGCCATATGTTCAGAGTTTCTACTCTATGTCCCTCGAATTCTCGGGCTTCATGGTGTTTGGTCAGGCTTGGCTCTCTTCATGGTCCTACGA ACAGTAGCTGGAATCGCAAGTCCAACGGGCCATGTCCGTGCAAAGCTGGTCGTTATGCCATATATGCAAGGCGCCAATGCACGACCTCTTGTAGTACTCC CCTCCATATTCCTTGAGATACCCGTCCCACCTCGCAGCATCATTCTCCATCTCCTCGATCTTCAGAAGCTTAAACTTCCCATTGAGGAGCTCCATCAGCC ACCGCCACCTCATCTCGGAAGTGAACTGGTTCGACAGGCTCTCCGAGAACCCTAG
AA sequence Show only first row Show all	>Lus10023944 pacid=23160789 polypeptide=Lus10023944 locus=Lus10023944.g ID=Lus10023944.BGIv1.0 annot-version=v1.0 MRNHLSAEYGDRLSPVVTRRRRHGSVLLYNQSASGHGVDSADVEESFELEEGGVTNGSAHEKFDAIGVPVEKRTHPTKVKRSIQLGSAGVATINNISKLL NIPLLSVSTYFVGEDIAKHAAVDSTAAEEGHTNGSLTGKVVKRKQLTSVSTALLLAIGIGIFEATVLSLGRGPFLGLMGVTPGTPMLIQQRFLSVKALGA PAVVMSLALHGIFRDFKDNKTSLFCMVFLGTFVQFVCTSQPLNALAYIFDGLHFDVSDFTYAACSMMTVGAICSEFLLYVPRILGLHGVWSGLALFMVLR TVAGIASPTGHVRAKLVVMPYMQGANARPLVVLPSIFLEIPVPPRSIILHLLDLQKLKLPIEELHQPPPPHLGSELVRQALREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	2.0	0.9224
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	3.0	0.9039
AT4G31880			unknown protein		Lus10002307 [exp]	8.8	0.9063
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	8.9	0.8492
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	12.0	0.8914
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005805 [exp]	12.7	0.5980
AT5G48140			Pectin lyase-like superfamily ...		Lus10039154 [exp]	13.4	0.7509
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	15.8	0.8728
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10015498 [exp]	17.8	0.6697
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	17.9	0.7917

Compare expression of checked genes

Lus10023944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.