Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17120 256 / 1e-82 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G77630 114 / 3e-28 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT1G21880 108 / 7e-27 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT2G23770 45 / 9e-05 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014441 [exp] 548 / 0 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10026372 [exp] 385 / 7e-133 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10003326 [exp] 370 / 2e-127 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10022630 [exp] 369 / 5e-127 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014442 [exp] 159 / 5e-47 AT2G17120 223 / 2e-72 lysm domain GPI-anchored protein 2 precursor (.1) Lus10042285 [exp] 156 / 4e-43 AT1G73470 152 / 8e-42 unknown protein Lus10023946 [exp] 115 / 3e-31 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1) Lus10025643 [exp] 120 / 3e-30 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10018191 [exp] 119 / 4e-30 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183500 [exp] 344 / 2e-117 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 330 / 7e-112 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.005G176700 [exp] 120 / 2e-30 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.002G084800 [exp] 117 / 2e-29 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.007G032300 [exp] 56 / 2e-08 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128501 [exp] 55 / 2e-08 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 49 / 4e-06 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G085350 [exp] 47 / 5e-06 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10023945 pacid=23160666 polypeptide=Lus10023945 locus=Lus10023945.g ID=Lus10023945.BGIv1.0 annot-version=v1.0 ATGAACCGCCGCCACGTACCCGCTCTCTTCCTCTTCCTTCTCATCGCAATCTCTACACTCCTCACTCCGCCCACAACCGCCGCCACCTTCAAGTGTAACA CCACCACTTCCCCTTCCAAATGCCACTCCTTAATCGACTACATCTCCCCTCAAAACGCCACCACGACATTCGGCGCCGTCCAAACCCTCTTCGCAATCCG AAACCTCCGCTCATTATTGGGAGCCAACAACCTCCCTCTCTCCACCCTTCAGAACCAAACCATCCCGCCGAATCAGAGCCTCAGAATCCGGTTCCCCTGC CTCTGCCGCCGCGGCGCCGGAGTATCGAACAAGCTGCCGGTTTACACCGTGAAAAAAGGCGACGGACTCTTCGACATTGCTACGAAAGTGTTCGCCGGAG TCGTGACAGCCGACGAGATTGCTGCCCTGAACAATGTAACGGATAAGGATCTGATCAAGGTGGGGCAGAGGCTGTGGATTCCTCTGCCGTGTAGCTGCGA TGACGTGGACAGTGGTGGTAAGGTGGTGCATTACGGACACGTGGTGGAACCTGGGAGCTCCGTTGATTCGATTGCTGCGAGGTTTGGGAGTAGCGTGGAG GTTTTGATGGGTCTTAATGGGTTGAAGAATGGGTCGGGTTTGTTGGCAGGTCAAGTTCTTGATGTTCCTCTAAGAGCTTGTAATTCGTCAATTCTACCCG ATTCAGAAGACTCGAATCTGCTGTTAGCTAACGGGACTTATGTCTTCACTGCTCACAATTGCGTCCAATGCAACTGTGATGCCTCGAACAATTGGACGTT GCGGTGCCAGCCATCTGGGGTTAAGCCGTCAGATCCCTGGTCAACTTGCCCTGCTATGCAATGTGGAGGAGATAATGGTGTAACGTTAGGGAACTCGACT GCTTCGGATTGCGGTAGCGCCATCTGCTCCTACGCTGGTTACTCTTCCAACCAAACCATCTTCACCTCCCTTGACAGCACCTGTCCAGCCAGTCCCTCCG GCAGCCCCCCAAGTGGGAATTCCGGTGGGAGGAATGGTTCATCAAAGTGGTGGAATTTGGGTTTGATGGGGTTGGTTCATTTGATGTTGCTACAGCTTTG TTTACGGCTATGA
AA sequence Show only first row Show all	>Lus10023945 pacid=23160666 polypeptide=Lus10023945 locus=Lus10023945.g ID=Lus10023945.BGIv1.0 annot-version=v1.0 MNRRHVPALFLFLLIAISTLLTPPTTAATFKCNTTTSPSKCHSLIDYISPQNATTTFGAVQTLFAIRNLRSLLGANNLPLSTLQNQTIPPNQSLRIRFPC LCRRGAGVSNKLPVYTVKKGDGLFDIATKVFAGVVTADEIAALNNVTDKDLIKVGQRLWIPLPCSCDDVDSGGKVVHYGHVVEPGSSVDSIAARFGSSVE VLMGLNGLKNGSGLLAGQVLDVPLRACNSSILPDSEDSNLLLANGTYVFTAHNCVQCNCDASNNWTLRCQPSGVKPSDPWSTCPAMQCGGDNGVTLGNST ASDCGSAICSYAGYSSNQTIFTSLDSTCPASPSGSPPSGNSGGRNGSSKWWNLGLMGLVHLMLLQLCLRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023945 [exp]	0	1
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	8.2	0.8182
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10035981 [exp]	13.4	0.7667
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	13.6	0.7831
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	14.7	0.7830
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	15.8	0.8094
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	16.4	0.8143
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	16.9	0.7763
AT4G18540			unknown protein		Lus10013937 [exp]	18.8	0.7591
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	22.6	0.7630
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	25.8	0.8085

Compare expression of checked genes

Lus10023945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.