Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20550 674 / 0 O-fucosyltransferase family protein (.1) AT1G76270 672 / 0 O-fucosyltransferase family protein (.1) AT4G38390 670 / 0 RHS17 root hair specific 17 (.1) AT4G16650 540 / 0 O-fucosyltransferase family protein (.1) AT5G64600 323 / 4e-104 O-fucosyltransferase family protein (.1) AT1G22460 315 / 2e-100 O-fucosyltransferase family protein (.1) AT5G15740 313 / 5e-100 RRT1 O-fucosyltransferase family protein (.1) AT1G38065 302 / 2e-96 O-fucosyltransferase family protein (.1) AT1G35510 302 / 2e-95 O-fucosyltransferase family protein (.1) AT3G02250 301 / 2e-95 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014444 [exp] 942 / 0 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 679 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 668 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 667 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 545 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 544 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 528 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 516 / 4e-178 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 319 / 3e-102 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183200 [exp] 716 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 698 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 671 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 670 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 553 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 551 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 316 / 2e-101 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 310 / 8e-99 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 310 / 5e-98 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 310 / 6e-98 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10023948 pacid=23160778 polypeptide=Lus10023948 locus=Lus10023948.g ID=Lus10023948.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGAAGAAGAACGGCGGCATTCAGCTCTTACACAATCATCACCACCACCATCACTACAACTGCATCGCCGCTCAGTTCAGCCATCACCGCC GCCGTATACATCTTTTCCCGTTGATCTCCGCCTTCTCCGCCTCTGTCCTCCTCTTCTTCGCCGCCATCTCATTCATCTCCTCTCCGCCGCCTCTCGTTGA GCGCCGCCACCTCCTCCAGCTCTCCTCGCCGCCACTCCTCAACGGCGGAGCTGGTGACGATGCGGCGCCGGAGGACGATTCTGTTACGGTTACGAGATTT CGCGTTCCGGAGACCGGCGGAAGCTTAGGCCTCGATTTGTGGAGCTCTCCGTCGTCGGAGTTCTTCTACGGTTGCAGCAACGCCAGCGAAAAGTTCCGAA CTGCTGAGAAGAAGACGGAACCGGATCGATACTTGTTGATCGTCACCAGCGGAGGATTGAATCAACAGAGAACAGGGATAACTGATGCAGTAGTTGCAGC ATATATCTTGAATGCTACTCTCATTGTCCCAAAGTTGGATCAGCAATCCTTCTGGAAAGACTCCAGCAATTTCTCGGAGATATTTGACGTGGACTGGTTC ATTACATCCCTCTCCAAAGGCGTTCGGATCATCAAAGAGCTCCCAAACGACGGTGAGAAGAAGCTAATTTCGCCGTATCACATGAGAGTTCCGAGGAAAT GTACTCCATCATGCTACGAGAAGAAAGTTCTCCCGGTCCTTAACAAGAAGCACGCTGTTCAACTTGGCAAATTCGACTACCGGCTCTCAAACCGGCTAGA ACCGGACTTGCAGAAGCTGAGATGCAGAGTCAACTACCACGCCTTGAAGTTCACTGATCCGATCGTCGAAATGGGTGCAAAGTTGGTGGAGAGGATGAGA AGGAAAGCTAAGCACTTCATTGCCCTGCACTTGAGGTTTGAGCCTGATATGCTAGCTTTCTCCGGGTGTGATTATGGTGGCGGAGATAAAGAGAAGTCGG AGCTTGGCCAAATCAGGCTAAGATGGAAGAGTTTACACCAAAAGAACCCAGAGAAGGAAAGAAGGCATGGGAGGTGTCCACTGACACCGGAGGAATTGGG ACTAATGCTCCGAGCATTGGGATTCGGAAGCGAAGTTCACATCTACGTAGCTTCAGGGGAGGTGTATGGCGGGGAGGAAACACTAGCGCCGCTCAAATCC CTCTTCCCCAACTTGTACACAAAGGAGACGTTAGCAACCAAGGAAGAACTAGCACCATTCGCGCCCTTCTCTTCTCGAATGGCTGCTCTCGACTTCACCG TCTGTGACGAGAGCGACGTCTTTGTCACTAACAATAACGGCAACATGGCCCGAATCCTTGCCGGCCGCCGGAGATACATGGGGCACAAGCCAACGATTCG ACCAAACTCGAAGAAGCTGTACAAGCTGTTCATGACGCGAGACAACACGACGTGGGAAGAATTCGGCTCCACAGTCCGGTCGAGTCAGATCGGGTTCATG GGAACTCCGAACGAGGTGAAGCCTGGGAGAGGCGAGTTCCATGAGAACCCTTCTTCTTGCATTTGTGAGACAAGTAATCACAGTGAATTTGAGAGAAAGA GTAGTGGAGGAGATTCTGACTATCAGACGAGGACGACCGCGGAGGTAGACGAACAGTACTTGTCGGATTCAGAGTCGCCGGATATTATTGGAACCGGCGG TGGGTTGTTGGAAGAGTTGTTTACGGACTGA
AA sequence Show only first row Show all	>Lus10023948 pacid=23160778 polypeptide=Lus10023948 locus=Lus10023948.g ID=Lus10023948.BGIv1.0 annot-version=v1.0 MKKKKKNGGIQLLHNHHHHHHYNCIAAQFSHHRRRIHLFPLISAFSASVLLFFAAISFISSPPPLVERRHLLQLSSPPLLNGGAGDDAAPEDDSVTVTRF RVPETGGSLGLDLWSSPSSEFFYGCSNASEKFRTAEKKTEPDRYLLIVTSGGLNQQRTGITDAVVAAYILNATLIVPKLDQQSFWKDSSNFSEIFDVDWF ITSLSKGVRIIKELPNDGEKKLISPYHMRVPRKCTPSCYEKKVLPVLNKKHAVQLGKFDYRLSNRLEPDLQKLRCRVNYHALKFTDPIVEMGAKLVERMR RKAKHFIALHLRFEPDMLAFSGCDYGGGDKEKSELGQIRLRWKSLHQKNPEKERRHGRCPLTPEELGLMLRALGFGSEVHIYVASGEVYGGEETLAPLKS LFPNLYTKETLATKEELAPFAPFSSRMAALDFTVCDESDVFVTNNNGNMARILAGRRRYMGHKPTIRPNSKKLYKLFMTRDNTTWEEFGSTVRSSQIGFM GTPNEVKPGRGEFHENPSSCICETSNHSEFERKSSGGDSDYQTRTTAEVDEQYLSDSESPDIIGTGGGLLEELFTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	0	1
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	2.2	0.8094
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	6.1	0.8292
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	11.2	0.8120
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	13.5	0.8162
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	16.2	0.8115
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	17.2	0.7989
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10030255 [exp]	18.3	0.7743
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004927 [exp]	20.6	0.8034
					Lus10008674 [exp]	22.2	0.7972
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	23.1	0.7896

Compare expression of checked genes

Lus10023948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.