Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35240 572 / 0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 524 / 5e-179 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 294 / 1e-88 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 291 / 5e-88 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 213 / 4e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 174 / 2e-46 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 164 / 3e-43 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 141 / 3e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 139 / 1e-34 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 139 / 1e-34 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014445 [exp] 912 / 0 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 302 / 5e-94 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 300 / 8e-92 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10012276 [exp] 202 / 5e-57 AT4G35240 248 / 7e-74 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10016004 [exp] 200 / 3e-56 AT4G35240 253 / 1e-75 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10041710 [exp] 187 / 7e-51 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 186 / 1e-50 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 176 / 8e-47 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 175 / 2e-46 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142900 [exp] 664 / 0 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 657 / 0 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 362 / 5e-117 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 338 / 4e-108 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G179100 [exp] 316 / 3e-97 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 312 / 8e-96 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 262 / 9e-78 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 194 / 2e-53 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 189 / 1e-51 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 178 / 1e-47 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10023949 pacid=23160710 polypeptide=Lus10023949 locus=Lus10023949.g ID=Lus10023949.BGIv1.0 annot-version=v1.0 ATGGGTGCTCTTTTATCGTCGAAGCCACCGCCAGCTCCGCCGTCGCCTCCCAGAGCTTCAGCTTGGGATTTCTTGAATCCGTTTGAGAGCTACGATAGCT TCTATCCGTCGAATCCTTCGAATCCTCCGAGCAGGGATTCAAGGGATGTTAGGGAAGAGGAAGGGATTCCTGATTTGGAGGATGAGGATTTACAACACGA GGTTGTCAAGGAAGTACATGGTGATCCTAAGTACGTTGAAGATAGTGATCATGATCATGGTTATTCGAAATCAGTAATGATGGATGATGAAGAGGAGGAG GTCAAAGGTGGTAAAGTTGGTGAAGCTGAGGCATCTCTTTATCAGACTAGGCCTAGCGTGTCGATGGAAACTGATGGACCTGAGTATGAGGTTCATGTTG TGGAGAAGAAAGTTGTTGATAAGGAGAAATCCTCGGATGATCGTGGCAATGGCGGTGGCGGAGGGTTCAAGGGACGAGCAGGGTGGAGAGATGTACGTCA AGTTGCTGTTGAAATCAAGATTCAGTTTGAGAGGGCTTCTGATTACGGTAATGAAATCGCTAAGATGCTGGAAGTTGGGAAGCTCCCTTATCAGCGAAAA CACGTTTCAAAGAAGTTGCACAGTGTTGCTACACCATTGTCGTTAATGTCCACACCACCATCCGCTTCTAATAGTTTGGAGGCTTCCTCCTCCAATGACG GTGCTGGTCCAGCTTACTTGGAGATGGAAGAAGAATTGGCTGTGAGATCAAAGAATCTTTCTTCTACCTTGCAAAAACTTCATCTTTGGGAGAAGAAGCT CTACACCGAAGTAAAGGCTGAGGAGAAAATGAGGGTAATCCACGACAGGAAGTGCCGAAAGCTGAAACGTTTAGATGAGAGGGGTGCTGAAGCTCACAAA ATTGACGATACTCGAAAATTGATAAGGGATCTGTCAACCAAAATAAGAATTGCAATTCAGGTTGTCGACAAGATCTCCGTCACAATAAACAAGATCAGAG ATGACGAGCTATGGCCGCAGCTGAACGATCTGATTCTAGGGTTGAGTAGAATGTGGAAAAATATGCTCGAATGCCATGGAATTCAGTGCCAAGCGATAAA GGAAATGAAAGGGTTAGGTCCAATGGGGTCGGGGAAGAAGCTGAGCGACGATCATCTCCAAGCTACACTGCAGCTTGAGCAACAGCTGCTTAATTGGACT TCAAGTTTCTCTAATTGGGTTGGAGCTCAGAAGGGTTACGTGAAAGCCCTGAATAATTGGCTGGTAAAATGTCTCCTCTACGAACCCGAAGAAACTCCCG ACGGAGTGCCTCCCTTTTCGCCTGGGAGGATGGGCGCACCTCCTGTGTTTGTGATCTGTAATCAGTGGACACAAGCTATTGAGAGAATATCCGAAAAGGA AGTGGTCGATTCCATGCGTGTCTTTGCAAACACGGTGTTTAAACTGTGGGAACAAGATAAGGAAGAGATACGCAGCAGAATGGTAACAAACAGGGATTTG GAACGGAAAGTTAAGAACTTGGACAGAGAGGATCAGAAGATACAGAAGCAGATTCAAGCACTGGACAAGAAAATGGTTCTCGTTTCGGGAGATGGCGACA GTCTATCGTTAAGTGGAAACATTGTGTACCACAGTGACACTAGTAATGGTAGTCTGCAAGGCAGTTTGCAGCGGATTTTCGAGGCCATGGAAAGGTTCAC AGCCGAGTCTGTGAAAGCTTACGAAGACCTTGTGCAACGTAGTGAAGAGGAGACAGGTGGCGGTGATCACGGGGAAGCTTCATAA
AA sequence Show only first row Show all	>Lus10023949 pacid=23160710 polypeptide=Lus10023949 locus=Lus10023949.g ID=Lus10023949.BGIv1.0 annot-version=v1.0 MGALLSSKPPPAPPSPPRASAWDFLNPFESYDSFYPSNPSNPPSRDSRDVREEEGIPDLEDEDLQHEVVKEVHGDPKYVEDSDHDHGYSKSVMMDDEEEE VKGGKVGEAEASLYQTRPSVSMETDGPEYEVHVVEKKVVDKEKSSDDRGNGGGGGFKGRAGWRDVRQVAVEIKIQFERASDYGNEIAKMLEVGKLPYQRK HVSKKLHSVATPLSLMSTPPSASNSLEASSSNDGAGPAYLEMEEELAVRSKNLSSTLQKLHLWEKKLYTEVKAEEKMRVIHDRKCRKLKRLDERGAEAHK IDDTRKLIRDLSTKIRIAIQVVDKISVTINKIRDDELWPQLNDLILGLSRMWKNMLECHGIQCQAIKEMKGLGPMGSGKKLSDDHLQATLQLEQQLLNWT SSFSNWVGAQKGYVKALNNWLVKCLLYEPEETPDGVPPFSPGRMGAPPVFVICNQWTQAIERISEKEVVDSMRVFANTVFKLWEQDKEEIRSRMVTNRDL ERKVKNLDREDQKIQKQIQALDKKMVLVSGDGDSLSLSGNIVYHSDTSNGSLQGSLQRIFEAMERFTAESVKAYEDLVQRSEEETGGGDHGEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	0	1
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026933 [exp]	6.8	0.8834
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	10.4	0.8845
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	13.5	0.8131
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	18.0	0.8671
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	22.8	0.8632
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	24.5	0.8595
					Lus10021752 [exp]	51.4	0.8430
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	54.7	0.8619
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	56.9	0.8428
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009829 [exp]	58.1	0.8097

Compare expression of checked genes

Lus10023949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.