Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023950 pacid=23160811 polypeptide=Lus10023950 locus=Lus10023950.g ID=Lus10023950.BGIv1.0 annot-version=v1.0 ATGACGCAAGTCTTGGAGATGCCCATAGATGATCAGAAGGATGTTCTGTATCTGGCATCGACATTGGGAAGGGTGTCGGTGCCAATATACCTCGGCGCAG GGTGCCAAGAAACTTTGGGACTTGGCGACTTGGGTGCTTGGCATCGTTGGATGCGAGAAACCTACAATGTTTTGAGTTTTTCCGAAAGGGATGATCAGTG GATATGGCGACTTCAATCGATCGCAAGGGTGATTCATGAGCTGTACAGACTACAGAGTATTAACAACCTTTGGTATGAACATTCTGTTCTGTTCTTCACA ACCATCATGTTTTACAAGACGAAAACAGAATGA
AA sequence Show only first row Show all	>Lus10023950 pacid=23160811 polypeptide=Lus10023950 locus=Lus10023950.g ID=Lus10023950.BGIv1.0 annot-version=v1.0 MTQVLEMPIDDQKDVLYLASTLGRVSVPIYLGAGCQETLGLGDLGAWHRWMRETYNVLSFSERDDQWIWRLQSIARVIHELYRLQSINNLWYEHSVLFFT TIMFYKTKTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023950 [exp]	0	1
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	17.5	0.9175
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	24.3	0.8667
					Lus10015413 [exp]	27.7	0.9149
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	28.8	0.9087
AT2G14095			unknown protein		Lus10012704 [exp]	29.8	0.9095
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	32.4	0.9119
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	32.5	0.9115
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	37.7	0.9094
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	41.0	0.9037
					Lus10006284 [exp]	52.3	0.9049

Compare expression of checked genes

Lus10023950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.