Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35210 177 / 7e-55 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 177 / 1e-54 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 170 / 5e-52 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 168 / 3e-51 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 89 / 1e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 83 / 1e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 69 / 1e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 69 / 2e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 61 / 9e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 56 / 5e-09 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023964 [exp] 413 / 1e-147 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 399 / 4e-142 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 381 / 8e-135 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 369 / 3e-130 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 368 / 6e-130 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 360 / 2e-126 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 355 / 5e-125 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 354 / 3e-124 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 353 / 6e-124 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182250 [exp] 201 / 8e-64 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 200 / 3e-63 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 192 / 2e-60 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 186 / 7e-58 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 184 / 3e-57 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 184 / 6e-57 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 182 / 2e-56 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 182 / 2e-56 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 151 / 2e-44 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 140 / 4e-40 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023951 pacid=23160796 polypeptide=Lus10023951 locus=Lus10023951.g ID=Lus10023951.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCATGCTCGATCGAACAGTTTCCCATCAAGGCCACACCCTCTAGTTTCAGAGGTCGACGAGCAGCTTTGCAGGTTAAGGCAAT CTCAAGCTGCTTCCACTTCATCATCATCCATAAGCAACAGCCTTAATGGCCTTCAGGATGTGTATGACTGTGTTGACAAGTTGATTCAACTCCCATCAAC TCAACAAGCCTTGATCCATGACCAGAATGAGCTATTAGATGGATCGCTCAGACTCTTGGATCTATGCATCACAGCCAGGGATGCCTTGTCCCAAACGAAA GAGTCGATTTGTGAACTTCAATCCGCCATTCGCAGAAGGCAAGGAGATCTGGTAGCAGAAACCAAGAGATATCTCAACTCAAGGAAGACTGTGAAGAAAG CAATCCTGAAGGCCTTGAAGGCTACTGAAAATAAAAAATCCACCTCATCCAATAACGCTGATGCAACCGATATGTTAAGAGAAGCTGAATCCATTGTTGT TGAGGTGTTGGAGGACTTGTTATCATTCATTTGCCAATCAAACTCCAAAACTAGCAGCTGGTCTTTGGTCTCCAAGCTGATGACAAGCCAAAAAAGGGTT GCTGCAGCATCAGAAAACGAATTCGCTGATGTCAATGCCTGTTTGAAGACGAACAAATCTAGTGAGGAAATCCAAGCTCATCTGAAGAACTTGCAGCCAT GCATTCAAGATCTTGAGGAAGGAGTTGAGTCCCTCTTTAGGTGCTTGATCAAAACAAGAGCCTCCATTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10023951 pacid=23160796 polypeptide=Lus10023951 locus=Lus10023951.g ID=Lus10023951.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSRPHPLVSEVDEQLCRLRQSQAASTSSSSISNSLNGLQDVYDCVDKLIQLPSTQQALIHDQNELLDGSLRLLDLCITARDALSQTK ESICELQSAIRRRQGDLVAETKRYLNSRKTVKKAILKALKATENKKSTSSNNADATDMLREAESIVVEVLEDLLSFICQSNSKTSSWSLVSKLMTSQKRV AAASENEFADVNACLKTNKSSEEIQAHLKNLQPCIQDLEEGVESLFRCLIKTRASILNIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35210			Arabidopsis protein of unknown...		Lus10023951 [exp]	0	1
AT4G39830			Cupredoxin superfamily protein...		Lus10037103 [exp]	11.3	0.7341
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	11.6	0.7623
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029314 [exp]	15.0	0.6910
AT2G17080			Arabidopsis protein of unknown...		Lus10023959 [exp]	20.0	0.7782
AT2G21100			Disease resistance-responsive ...		Lus10005062 [exp]	22.2	0.6986
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10027357 [exp]	33.5	0.7185
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029814 [exp]	159.6	0.6882

Compare expression of checked genes

Lus10023951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.