Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 189 / 2e-59 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 184 / 1e-57 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 181 / 2e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 181 / 4e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 85 / 3e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 85 / 3e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 69 / 1e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 69 / 3e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 68 / 4e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 68 / 5e-13 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023965 [exp] 428 / 2e-153 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 388 / 1e-137 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 387 / 3e-137 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 382 / 1e-135 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 382 / 2e-135 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 382 / 3e-135 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 369 / 3e-130 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 365 / 9e-129 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 362 / 1e-127 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 210 / 6e-67 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 204 / 1e-64 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 199 / 6e-63 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 198 / 2e-62 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 188 / 8e-59 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 187 / 4e-58 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 177 / 3e-54 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 173 / 1e-52 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 163 / 4e-49 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 159 / 2e-47 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023952 pacid=23160678 polypeptide=Lus10023952 locus=Lus10023952.g ID=Lus10023952.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACGCTCGATCCAACAGTTTCCCATCAAGGTCTCACCCCTTAGTTTCGGAATTCGACGAGCAACTTTGCAGGTTGAGACAAT CTCAAGCTGCTTCCACTTCATCATCATCATCCATAAGCAACAAGCTTAATGGCCTTCAAGCTGTTTATGACTGTGTTGACAAGTTGATTCAACTTCCATC AACTCAGCAAGCCATGATTCATGACCAAAATGAGCTACTAGATGGATCTCTTAGGCTCTTAGATCTATGCAACACAGCTAAGGATGCCTTGTCCCAAATG AAAGAGTCTGTTTCTGAACTTCAATCCGCCATTCGCAGAAGGCAAGGAGACTTGGTAGCAGAAACCAAGAGATACCTCAACTCAAGGAAGATTGTGAAGA AATCAATTCAAAAGTCCTTGAAGGCTATTGAAACCAAGAAATCTACCTCATCCAGCAACGTTGAGTCGATCTCCATGTTGAGAGAATCTGAGTTGATAGT TGCTGAGGTGTTGGAAAGCTTGTTGTGTTTCATTTCCCAATCAAACACCAAGTCCAGCAACTGGTCATTGGTTTCCAAGCTGATTGCATCCAAGAAGACT CAAGTTTCTGAAAACTCAAATGAATTTGCAGAAGTGGATGCCTGTTTGAAGAGAAGTAAATCTAGTGAGGAAATCCAAGCTTATCTGAAGAACTTACAGC CATGCATTCAAGATCTTGAAGAAGGAGTTGAGTCACTCTTTAGGTGTCTCATCAAAACAAGAGCCTCCATTCTCAATGTTCACAATCTGTAA
AA sequence Show only first row Show all	>Lus10023952 pacid=23160678 polypeptide=Lus10023952 locus=Lus10023952.g ID=Lus10023952.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSRSHPLVSEFDEQLCRLRQSQAASTSSSSSISNKLNGLQAVYDCVDKLIQLPSTQQAMIHDQNELLDGSLRLLDLCNTAKDALSQM KESVSELQSAIRRRQGDLVAETKRYLNSRKIVKKSIQKSLKAIETKKSTSSSNVESISMLRESELIVAEVLESLLCFISQSNTKSSNWSLVSKLIASKKT QVSENSNEFAEVDACLKRSKSSEEIQAYLKNLQPCIQDLEEGVESLFRCLIKTRASILNVHNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023952 [exp]	0	1
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	6.7	0.8613
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	10.7	0.8480
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	15.2	0.8481
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	16.5	0.8387
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	21.9	0.8245
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	24.2	0.8327
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	28.1	0.8324
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	34.9	0.8306
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	36.6	0.8255
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10034379 [exp]	36.7	0.6880

Compare expression of checked genes

Lus10023952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.