Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35200 176 / 2e-54 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 169 / 1e-51 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 167 / 7e-51 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 166 / 2e-50 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 102 / 1e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 102 / 2e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 82 / 2e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 82 / 6e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 82 / 2e-17 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 77 / 1e-16 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023958 [exp] 468 / 4e-169 AT4G35200 193 / 6e-61 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 273 / 4e-92 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 269 / 1e-90 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 268 / 5e-90 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 264 / 1e-88 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 263 / 4e-88 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 262 / 5e-88 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 260 / 3e-87 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 256 / 9e-86 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 214 / 5e-69 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 213 / 3e-68 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 207 / 5e-66 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 197 / 3e-62 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 189 / 7e-59 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 188 / 9e-59 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 184 / 6e-57 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 183 / 1e-56 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 155 / 4e-46 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 155 / 1e-45 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023953 pacid=23160715 polypeptide=Lus10023953 locus=Lus10023953.g ID=Lus10023953.BGIv1.0 annot-version=v1.0 ATGGAAGGTACCTCTTTCCATGCTCGCTCCAACAGTCTGCCCTCTGATAGGCCACACCCTCTAGTTGCAGAACTCGACGGCCAAATCTGCAGGCTTAGAC AATCCGAAGCATCATCATCATCCGTATACAAGAAGCTGAGTGGCCTTCAGGATCTTTACGATTGTGTTGACCAGTTGCTACAATTGCCATTGACACAACA AGCCATATTCGTCCAGAAATCCTTCAATGAGCTATTGGATGGTTCCCTGAGGCTCCTGGACTTTTGCAGCACTGCAAAGGATGCATTGTCCCAGATGAAA GAATCTGTTTTCGAACTACAATCCGCTATTCGAAGAAGATCAGAAGGTGGTTTGGAAGGAGAAACCAGAAGGTATCTTAACTCAAGAAAGATCGTGAAGA AAGCAATCCAGAAGGTGTTGAAGAAGGCTACTATGGAAAGCCGAACGAAATCATCCAACGAGTCCGAGGTTGTCACCATGTTAAGAGAAGCTGAAGCAGT GAGTGTCTCAGTGCTGGAAAGCCTTTTGGGATTCATTTCAGAAACTGGGAAATCAAAGTCAACCAGCAGCTGGTCAATAGTCTCAAAGCTGACGAGGGTT GCAGCAGTATCAGACGATAAAGCGAACAGAAACAACGAATTCGCAAAGTTAGATGCTTCCTGGAAGACTAATGAAGAGGTTCAAGCTCGTTTGAAGAACT TGGAGCTACGCATTCAAGATCTCGAAGAAGGCGTAGAGTCCTTGAATAGGAGGTTCATCAAAACGAGAGCCTCCATTCTCAACATGTACAACATCTGA
AA sequence Show only first row Show all	>Lus10023953 pacid=23160715 polypeptide=Lus10023953 locus=Lus10023953.g ID=Lus10023953.BGIv1.0 annot-version=v1.0 MEGTSFHARSNSLPSDRPHPLVAELDGQICRLRQSEASSSSVYKKLSGLQDLYDCVDQLLQLPLTQQAIFVQKSFNELLDGSLRLLDFCSTAKDALSQMK ESVFELQSAIRRRSEGGLEGETRRYLNSRKIVKKAIQKVLKKATMESRTKSSNESEVVTMLREAEAVSVSVLESLLGFISETGKSKSTSSWSIVSKLTRV AAVSDDKANRNNEFAKLDASWKTNEEVQARLKNLELRIQDLEEGVESLNRRFIKTRASILNMYNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	2.2	0.9451
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	3.5	0.9303
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	4.2	0.9221
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	5.1	0.9370
AT2G17080			Arabidopsis protein of unknown...		Lus10014448 [exp]	6.6	0.8978
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	6.7	0.9309
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	7.0	0.9123
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	7.7	0.9272
AT2G17080			Arabidopsis protein of unknown...		Lus10014449 [exp]	9.2	0.8781
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10001132 [exp]	9.5	0.9006

Compare expression of checked genes

Lus10023953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.