Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26100 433 / 2e-152 Galactosyltransferase family protein (.1) AT3G14960 340 / 3e-116 Galactosyltransferase family protein (.1) AT1G53290 339 / 1e-115 Galactosyltransferase family protein (.1) AT1G32930 167 / 4e-48 Galactosyltransferase family protein (.1) AT1G77810 161 / 6e-46 Galactosyltransferase family protein (.1.2) AT4G26940 158 / 9e-45 Galactosyltransferase family protein (.1.2) AT1G05170 157 / 1e-44 Galactosyltransferase family protein (.1.2) AT1G22015 154 / 3e-43 DD46 Galactosyltransferase family protein (.1) AT1G11730 150 / 1e-41 Galactosyltransferase family protein (.1) AT1G33430 149 / 2e-41 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014451 [exp] 633 / 0 AT2G26100 437 / 1e-153 Galactosyltransferase family protein (.1) Lus10013683 [exp] 335 / 5e-114 AT1G53290 497 / 4e-178 Galactosyltransferase family protein (.1) Lus10017943 [exp] 222 / 1e-70 AT1G53290 328 / 2e-112 Galactosyltransferase family protein (.1) Lus10033248 [exp] 166 / 1e-47 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 166 / 2e-47 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 164 / 6e-47 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 164 / 7e-47 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 156 / 7e-44 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 151 / 2e-42 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228900 [exp] 498 / 6e-178 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 353 / 3e-121 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 341 / 3e-116 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.018G053150 [exp] 295 / 2e-98 AT2G26100 315 / 2e-106 Galactosyltransferase family protein (.1) Potri.001G450200 [exp] 165 / 3e-47 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 160 / 1e-45 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 160 / 2e-45 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 155 / 9e-44 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 152 / 2e-42 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 150 / 1e-41 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10023955 pacid=23160783 polypeptide=Lus10023955 locus=Lus10023955.g ID=Lus10023955.BGIv1.0 annot-version=v1.0 ATGCCACTCTTCTCCCACCGTAGTAGCCACTCCTCTTCCTCCGCCAGTCTACCAACCATTAGTTCCAAAACCTTCAAACCTCAAAAACCCAGCTTACTCA CATCCAACCTCAAAAACCCCCTTCTCATATTCTCCTTCTTCTCGCTCTTCGTCGGCATTACGGGCACCTTGTTCGCTATAACTGCCATCCGCCGCCCCCT ACCTCTGCCCGTCTACCGTTGCGGCGGATCCGAAGACACCTTCCGTGCATTTTACTCCTCTTCTACTCACCGCGTTGGAGGAGATCATAATAATGTCCAC GGCCTGGTCGATCGGCCTAAGCTCCTTGGGTTCGTCGGGATTCAGACCGGATTCGACTCTGTTGATCGCCGCGCTGCACTGAGGGAAACTTGGTTCCCTT CTGATCCAGATAGCCTTTTGAGGTTGGAGCAAGCTACTGGTTTGGCATTTAGGTTTGTCATAGGGTATTCAAAAGATCCCAAGAAGATGCAAAAACTGCA GAAAGAGGTGGAGAAATATCGAGACTTCTTGGTCATTGATAATGAGGAAGAATACCTCAAGCTTCCATACAAGACATTGACATTTTTCAAGGCGGCTTAT AAACATTTTGAAGCAGAGTATTACGTGAAAGCCGATGATGATATTTACTTGCGTCCAGATCGGTTGGCAACTCTTCTTGCAAAAGAAAGAACCCACTCAA AGACGTATATTGGATGCATGAAGAAAGGACCAGTAATCACTGACCCCAAGTATGAGAGATCAGGACACCTGATTGGGAATGAGTACTTCTTGCATGCTTA TGGCCCTATATATGTCCTTTCTGCTGAGATTGTTGCTTCGTTGGCGGTTGCTAGAAATAACAGCAATGAGGATGTTACTATTGGGTCTTGGATGCTAGCG ATGGATGTCAAACATGAAGACAACCGAGCAATATGTGATCCACGATGCACTCCAACATCTATAGCCGTTTGGGATATCCCCAAATGTTCAGCACAGCTGG AGATTACTGGTACTGGAGCACATCTGGAAATGAGAAAAGCTGCCTCTGATTGTTGTAACTGA
AA sequence Show only first row Show all	>Lus10023955 pacid=23160783 polypeptide=Lus10023955 locus=Lus10023955.g ID=Lus10023955.BGIv1.0 annot-version=v1.0 MPLFSHRSSHSSSSASLPTISSKTFKPQKPSLLTSNLKNPLLIFSFFSLFVGITGTLFAITAIRRPLPLPVYRCGGSEDTFRAFYSSSTHRVGGDHNNVH GLVDRPKLLGFVGIQTGFDSVDRRAALRETWFPSDPDSLLRLEQATGLAFRFVIGYSKDPKKMQKLQKEVEKYRDFLVIDNEEEYLKLPYKTLTFFKAAY KHFEAEYYVKADDDIYLRPDRLATLLAKERTHSKTYIGCMKKGPVITDPKYERSGHLIGNEYFLHAYGPIYVLSAEIVASLAVARNNSNEDVTIGSWMLA MDVKHEDNRAICDPRCTPTSIAVWDIPKCSAQLEITGTGAHLEMRKAASDCCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	0	1
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	1.0	0.9469
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	1.4	0.9333
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	2.0	0.9049
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10019695 [exp]	2.6	0.8974
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	3.0	0.9263
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10005319 [exp]	4.7	0.8779
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	4.9	0.8965
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	5.5	0.8847
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	6.2	0.8897
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	7.4	0.8940

Compare expression of checked genes

Lus10023955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.