Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36640 165 / 3e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75170 160 / 2e-48 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G22180 121 / 3e-33 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 117 / 8e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G05370 52 / 9e-08 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 49 / 5e-07 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 45 / 8e-06 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G34580 40 / 0.001 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025128 [exp] 221 / 1e-72 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 200 / 5e-64 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 199 / 8e-64 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 168 / 1e-51 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 168 / 1e-50 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10033464 [exp] 121 / 5e-33 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10020911 [exp] 120 / 2e-32 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10021919 [exp] 49 / 9e-07 AT1G05370 522 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10041206 [exp] 47 / 3e-06 AT1G05370 532 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261000 [exp] 176 / 7e-55 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 170 / 2e-52 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 168 / 2e-51 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 164 / 7e-50 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 162 / 9e-50 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 129 / 6e-36 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 127 / 5e-35 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.010G088300 [exp] 57 / 2e-09 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G152100 [exp] 50 / 5e-07 AT1G05370 499 / 2e-176 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 43 / 5e-05 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10023956 pacid=23160707 polypeptide=Lus10023956 locus=Lus10023956.g ID=Lus10023956.BGIv1.0 annot-version=v1.0 ATGAAGTTTGTTCCTTTCTTCATTCAGCCTATAAACGATCCAGCTGGAGTTGCAATGTTTCGACGCAGGGCTAATACTCACCAGGAACGTGAGAATGAAT CTCAGGAACAAGAGGCTAAGATCATTGAGCTTAAGGCCGCCATTGGTCCTTTGTCAGGTCGGAGCTTGGTGTATTGTAGCGACGCATGCTACAAAAGGTA CTTGGAAGCAAGGAACTGGAATGTAGAGAAAGCCAAGAAGATGTTGAAAGACACTCTTGAATGGAGGTCAAGCTACAAGCCTGAGGAGATTCGTTGGCCA GAGATTGCACATGAAGGCGAAACTGGAAAGATATTCAGGGCCAGTTTCCGCGACAGACAAGGAAGGTCTGTTCTTATTCTGAGGCCTGGAATGCAGGTTG TGAACTACTTCCTGGATCCCAGGACAATTGAGAAAGTAAAGTTTGTGTACCCGAAGAACCAAGAAAGCGTAGAGGTCATGCGAGCATTCTTTGACGATCA GAACCTTCCAGCTGCGTTTGGAGGGGAATCTAACTTGGAGTATGACCATGCAGAGTTCTCAAAGCTAATGCTTCAAGATGATGTGAAGACTGCTTCATTC TGGGGCTTAGTGAGCAATGGGCATCCCGAGTCATGA
AA sequence Show only first row Show all	>Lus10023956 pacid=23160707 polypeptide=Lus10023956 locus=Lus10023956.g ID=Lus10023956.BGIv1.0 annot-version=v1.0 MKFVPFFIQPINDPAGVAMFRRRANTHQERENESQEQEAKIIELKAAIGPLSGRSLVYCSDACYKRYLEARNWNVEKAKKMLKDTLEWRSSYKPEEIRWP EIAHEGETGKIFRASFRDRQGRSVLILRPGMQVVNYFLDPRTIEKVKFVYPKNQESVEVMRAFFDDQNLPAAFGGESNLEYDHAEFSKLMLQDDVKTASF WGLVSNGHPES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	0	1
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	2.0	0.7950
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040929 [exp]	6.2	0.7281
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10023253 [exp]	6.9	0.7573
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	11.0	0.7570
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	12.9	0.7793
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	17.7	0.7372
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	18.8	0.7576
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10018594 [exp]	26.2	0.7481
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	27.1	0.7224
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	27.2	0.7366

Compare expression of checked genes

Lus10023956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.