Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 153 / 6e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 150 / 5e-45 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 145 / 6e-43 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 139 / 1e-40 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 71 / 3e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 69 / 6e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 57 / 8e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 55 / 1e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 49 / 1e-06 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 48 / 1e-06 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025126 [exp] 313 / 1e-108 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 162 / 2e-49 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 161 / 6e-49 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 156 / 4e-47 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 156 / 4e-47 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 152 / 1e-45 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 152 / 1e-45 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 149 / 3e-44 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 142 / 1e-41 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 159 / 9e-48 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 155 / 1e-46 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 152 / 2e-45 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 152 / 3e-45 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 149 / 5e-44 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 148 / 1e-43 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 147 / 2e-43 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 147 / 4e-43 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 118 / 3e-32 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 115 / 5e-31 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023957 pacid=23160776 polypeptide=Lus10023957 locus=Lus10023957.g ID=Lus10023957.BGIv1.0 annot-version=v1.0 ATGTCCGAGAAATGTGTTGATGCATTGTCTCTCGCCAACCCGAAACCCACCAGCTTCATCAGCCAGAAACTAACAGTATCGTTTGATCACAAGTTCCTGA ACCAGCTATTGGATGGATCTCTTAGACTTCTAGACTTGTGCAACACTGCCAAAGATGCTTTGTCTCAAATGAAGGAGTCTGTTTGCGAACTTCAATCAGT TCTCCGAAGAAAGCAAGGAGATATAGATCAGAGTGATGTGAAGCACTACTTGACCAAGAGAAAGGGAGTCAAGAAGTCCATCCAGAAAGCCATGAAGAAC GTGAAGAGCATCCAATCTAAAAGCAATGACAACCCTGAGATTGTTGCAGTCTTCAGAGACGTTGAAGCCATTACGATCAAGGTGTTCGAGTCCTTGGCTT TATTCGTCTCGGTCTCCAGGCCAAGCGGATGGTCATTTGTTTCCAAGCTAAAGCACCAGAAGAAGGTGGCTAATGAGCAAGAGATGAATGAATTCACAAC AGTGGATGCTTCACTGGAAGCTCTACTGGGAAACAAAACTAACAAATGTGACGAAGTTCAGACCCAGTTGAAGGATTTGGAGCTGTGCATTCAAGATCTC GAGCAAGGAACCGAGTGCCTCTACAGGGGGATGATCAAATCTAGAGTCGCCATTCTTAACATCTTCAACTAG
AA sequence Show only first row Show all	>Lus10023957 pacid=23160776 polypeptide=Lus10023957 locus=Lus10023957.g ID=Lus10023957.BGIv1.0 annot-version=v1.0 MSEKCVDALSLANPKPTSFISQKLTVSFDHKFLNQLLDGSLRLLDLCNTAKDALSQMKESVCELQSVLRRKQGDIDQSDVKHYLTKRKGVKKSIQKAMKN VKSIQSKSNDNPEIVAVFRDVEAITIKVFESLALFVSVSRPSGWSFVSKLKHQKKVANEQEMNEFTTVDASLEALLGNKTNKCDEVQTQLKDLELCIQDL EQGTECLYRGMIKSRVAILNIFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023957 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	2.8	0.9407
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	3.5	0.9303
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	3.5	0.9402
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043144 [exp]	7.9	0.8880
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	8.7	0.9285
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	14.0	0.8913
AT2G17080			Arabidopsis protein of unknown...		Lus10014449 [exp]	14.7	0.8660
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	15.2	0.9139
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10001132 [exp]	17.0	0.8899
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	17.2	0.9150

Compare expression of checked genes

Lus10023957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.