Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 191 / 3e-60 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 186 / 3e-58 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 180 / 5e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 178 / 4e-55 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 103 / 5e-26 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 96 / 2e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 82 / 4e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 76 / 8e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 75 / 4e-15 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 62 / 5e-11 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025125 [exp] 402 / 3e-143 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025124 [exp] 401 / 8e-143 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 393 / 8e-140 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 387 / 3e-137 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 381 / 7e-135 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014446 [exp] 385 / 1e-134 AT2G17080 211 / 3e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 375 / 8e-133 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 373 / 1e-131 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 372 / 2e-131 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 203 / 3e-64 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 196 / 1e-61 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 193 / 1e-60 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 191 / 6e-60 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 182 / 2e-56 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 176 / 3e-54 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 174 / 2e-53 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 173 / 7e-53 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 161 / 2e-48 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 149 / 8e-44 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023959 pacid=23160765 polypeptide=Lus10023959 locus=Lus10023959.g ID=Lus10023959.BGIv1.0 annot-version=v1.0 ATGGCAGCAACCGCCTTCCACGCTCGATCCAACAGTTTCCCATCAAGGTCTCACCCTTTAGTTTCGGAGTTCGATGACCAACTTTGCAGGTTGAGACAAT CCCAAGCTGCCTCCACATCATCATCATCATCCATAAGCCACAAGCTTAATGGCCTTCAAGATGTTTATGACTGTGTTGACAAGTTGATTCAACTTCCATC AACTCAGCAAGCCATGATCCATGACCAAAACGAGCTATTGGATGGATCCCTCAGACTCTTGGATATGTGCAATGCAGCCAAGGATGCCTTGTCTCAAACA AAAGAATCGGTTTGTGAACTTCAATCCGCCATCCGTAGAAGGCAAGGAGATCTGGTAGGAGAAACCAAAAGGTACCTCAACTCAAGGAAGACTACGAAGA AAGCAATCCAAAAGGCCTTGAAGGGTTATGAAACCAAGAAATCTACTTCTTCCAACAACATCGATGCAATCGACATGTTAAGAGAAGCTGAATCCATTGT TGTTGAGGTGTTGGAGAACTTGTTGTCATTCATTTCTCAATCAAACTCCAAGTCAAACAGCTGGTCTTTGGTCTCCAAGCTGATGGCAAGCCAAAAAAGG GTTACTGTAGCATCAGAAAATGAATTCGCTGATGTCGATGCCTGTTTGAAGACGAACAAATCTAGTGAGGAAATCCAAGCTCATCTGAAGAACTTGCAGC CATGCATTCAAGATCTTGAGGAAGGAGTTGAGTCCCTCTTTAGGTGCTTGATCAAAACAAGAGCCTCCATTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10023959 pacid=23160765 polypeptide=Lus10023959 locus=Lus10023959.g ID=Lus10023959.BGIv1.0 annot-version=v1.0 MAATAFHARSNSFPSRSHPLVSEFDDQLCRLRQSQAASTSSSSSISHKLNGLQDVYDCVDKLIQLPSTQQAMIHDQNELLDGSLRLLDMCNAAKDALSQT KESVCELQSAIRRRQGDLVGETKRYLNSRKTTKKAIQKALKGYETKKSTSSNNIDAIDMLREAESIVVEVLENLLSFISQSNSKSNSWSLVSKLMASQKR VTVASENEFADVDACLKTNKSSEEIQAHLKNLQPCIQDLEEGVESLFRCLIKTRASILNIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023959 [exp]	0	1
AT3G12760			unknown protein		Lus10000875 [exp]	3.0	0.8899
AT5G66440			unknown protein		Lus10041775 [exp]	4.8	0.8998
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	7.5	0.8954
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	9.4	0.8711
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	13.6	0.8817
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	14.5	0.8560
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	16.2	0.8776
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	16.3	0.8768
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	17.5	0.8816
AT4G35210			Arabidopsis protein of unknown...		Lus10023951 [exp]	20.0	0.7782

Compare expression of checked genes

Lus10023959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.