Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 189 / 2e-59 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 180 / 3e-56 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 179 / 1e-55 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 178 / 3e-55 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 92 / 5e-22 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 87 / 6e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 81 / 5e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 78 / 1e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 66 / 3e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 62 / 2e-11 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023962 [exp] 377 / 1e-133 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 370 / 1e-130 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 360 / 1e-126 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 360 / 2e-126 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 359 / 2e-126 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 358 / 6e-126 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025124 [exp] 349 / 2e-122 AT2G17080 217 / 2e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 349 / 3e-122 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 348 / 6e-122 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 193 / 1e-60 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 186 / 9e-58 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 184 / 4e-57 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 182 / 2e-56 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 178 / 6e-55 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 177 / 1e-54 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 170 / 1e-51 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 169 / 3e-51 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 145 / 4e-42 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 137 / 3e-39 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023960 pacid=23160692 polypeptide=Lus10023960 locus=Lus10023960.g ID=Lus10023960.BGIv1.0 annot-version=v1.0 ATGGCAGGAACCACCTTCCACGCTCGATCCAACAGTTTCCCTTCAAGATCACACCCTCTAGTTTCAGAAATCGACGAACAACTTTGCAGGTTGAGACAAT CTCAAGCTGCCTCCACATCATCATCATCATCTATAAGCAACCGGCTTAATGGCCTTCAGGATGTGTATGACTGTGTTGACAAGTTGATTCAACTTCCATC AACTCAACAGGCCATGATCCATGATCAAAATGAGCTACTAGATGGATCTCTGAGGCTCTTGAATATGTGCAACACAGCTAAGGATGCCTTGTCCCAAATG AAAGAATCTGTTTCTGAACTTCAATCCACCATTCGAAGAAGGCAAGGAGACATGGTAGCCGAAACCAATAGATATCTTAACTCAAGGAAGGCTGTGAAGA AAGCAATCCAAAAGGCCTTGAAGGCTATTGGATCCAAGAAATCAGAGACGGTTACCATGTTGAAAGAATCTGAGTCCGTTGCTGTGGAAGTTTTGGGGAG CTTGTTGTCTTTCATCTCTCAATCAAACTCCAAGTCAAGCAACTGGTCTTTGGTCTCCAAGCTGATGGCAAGCCAAAAAAGGGTTGCTGCAGCATCAGAA AACGAATTCGCTGAAGTCGATGCCTGTTTGAAGACAAACAAATCTAGTGAGGAAATCCAAGCTCATCTGAAGAACTTGCAGCCATGCATTCAAGATCTTG AGGAAGGAGTTGAGTCCCTCTTTAGGTGTCTCATTAAAACAAGGGCCTCCATTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10023960 pacid=23160692 polypeptide=Lus10023960 locus=Lus10023960.g ID=Lus10023960.BGIv1.0 annot-version=v1.0 MAGTTFHARSNSFPSRSHPLVSEIDEQLCRLRQSQAASTSSSSSISNRLNGLQDVYDCVDKLIQLPSTQQAMIHDQNELLDGSLRLLNMCNTAKDALSQM KESVSELQSTIRRRQGDMVAETNRYLNSRKAVKKAIQKALKAIGSKKSETVTMLKESESVAVEVLGSLLSFISQSNSKSSNWSLVSKLMASQKRVAAASE NEFAEVDACLKTNKSSEEIQAHLKNLQPCIQDLEEGVESLFRCLIKTRASILNIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033391 [exp]	4.6	0.8302
AT1G77680			Ribonuclease II/R family prote...		Lus10009880 [exp]	4.9	0.8314
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	5.2	0.8437
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	6.6	0.8528
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	13.2	0.8469
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	17.7	0.8128
					Lus10015674 [exp]	19.8	0.7845
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	22.3	0.7639
AT1G20770			unknown protein		Lus10013217 [exp]	22.6	0.8374
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10041801 [exp]	24.8	0.7436

Compare expression of checked genes

Lus10023960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.