Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14120 521 / 3e-180 Major facilitator superfamily protein (.1) AT3G01930 512 / 9e-177 Major facilitator superfamily protein (.1.2) AT5G50520 469 / 1e-160 Major facilitator superfamily protein (.1) AT5G50630 469 / 1e-160 Major facilitator superfamily protein (.1) AT2G39210 172 / 1e-46 Major facilitator superfamily protein (.1) AT1G80530 171 / 2e-46 Major facilitator superfamily protein (.1) AT4G34950 171 / 3e-46 Major facilitator superfamily protein (.1) AT2G16660 164 / 4e-44 Major facilitator superfamily protein (.1) AT1G74780 150 / 3e-39 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G28120 150 / 6e-39 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025123 [exp] 889 / 0 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 521 / 5e-180 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 514 / 1e-177 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10028803 [exp] 265 / 5e-81 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 263 / 2e-80 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 262 / 7e-80 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 257 / 4e-78 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 249 / 4e-75 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 172 / 2e-46 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098900 [exp] 635 / 0 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 550 / 0 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 546 / 0 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.003G012300 [exp] 277 / 8e-86 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 274 / 2e-84 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 265 / 3e-81 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 234 / 4e-69 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 173 / 4e-47 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 173 / 5e-47 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 165 / 5e-44 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10023961 pacid=23160768 polypeptide=Lus10023961 locus=Lus10023961.g ID=Lus10023961.BGIv1.0 annot-version=v1.0 ATGGAAGCGGCGGAAGGCAGCAGAAAGTCGATGGACTCGAAATTCAGGGCCTTGGGGAGCAGCAGATGGCTGGTATTCGTGTGCTCAATGTGGCTACAAT CGTGCGCTGGGATTGGCTACATGTTTGGTAGCATATCCCCTGTGATTAAGACTTCCATGGGTTATAACCAGAAACAGCTTGCCTTGCTTGGAGTTGCCAA GGATCTTGGTGATAGTATTGGATTCGTGCCTGGGAGTCTCATTGAGCTTTTCCCCACTTGGGTCCTTCTCCTTATTGGTGCTCTTCAAAACTTCCTTGGC TACGGCTTCGTTTGGCTTATTGTCACTCAAAGATTGCCTCCTCTTCCTCTTTGGGCGGTGAGTTCCAATGATTTTGTGTTTCTTTTTCAGATCTATCCAT CCCCAGCCAACGTTGTTGGGATTCTTAAAGGATTTGCAGGGTTAAGTGGAGCAATTCTAACTCAGGTTTATGCTATGATCAATTCTCCCAACCAATCATC ATTAATCTTCATGGTTGCAGTTGGCCCAACCATGGTGGCTATTTCTCTCATGTTCTTGGTTAGGCCTGTGGAGGATAACAAACAATCAGAAGATAGTTCA AATAGCTTCTCCTTTGTCTATGGAGTTTGCATACTTCTAGCTGCATATTTACTCGGCATCTTGATAGTGAATGATGTGGTTGCTCTCAAGAAAAAGGTTG ATCTCAGTCAAAATCTGGTTACCCTCCTTACTCTAGTCTTGCTCCTCATTGTATTAGCTCCTGTTTTGGTTCCACTTAAGTTGGTTTTCTTCTCTGAACC GATACCAACTATAGCCGAGCACCTTCTTTCTAAGCAAGTAGCAGCAACTAGACATCCACCAGAGCGATTAGGAAGCTTCGTTTTAAGTGAAACTGAAGAC GAAGATTCCGTTTCATCAACATCGGAAAGGAATAAAAGAATGGCTCACTTGCAAGCTAAGCTATACCAAGCTGCAGCAGAAGGAGCCGTTAGGAGAAAAG GAAATCCACGCCGAGGTGAAGACTTCACCTTAATGCAGGCATTAGTGAAGGCTGATTTCCTGCTAATTTGGTTCTCTCTTGTTCTGGCTGCTGGATCCGG CCTTACAGTGATCGATAACCTCGGTCAGATTTGTCAGTCACTCGGGTATGATGATGCGAACATATACGTTTCGATGATGAGCATTTGGAACTTTCTTGGC CGTGTTGCTGGTGGATACTTCTCTGAGGTGATCGTAAGAAAATTTGCATATCCGAGAGTTGTGGCTATGGCAGCAGTAGAGTTCGTAATGGCATTGGGAT TGTTCTACTCGGCCATGGGATGGCCAGGACAGATTTACGTAGTGAGTATTGTGATAGGACTTACTTATGGTGCCAATTGGGCCATTGTTCCTGCAGCAGT GTCTGAACTATTCGGGTTGAAGAGTTTCGGAGCTTTGTACAATTTCCTTAATCTTTCAACTCCTGCGGGATCTCTGGTGTTCTCTGGTGTCATTGCTAGC AGAATATATGATTACTACGCTGAGCAACAACAAGCTGGCCAGAATGGACAAACTCTCAAGTGTATGGGTTCCATATGTTTTTCCTTAACTTTTGGGATCA TGGGTTGTCTCTGCATTTTGGCTATGGTGTTGAGCATGATTGTGGTTCGTCGCACCAAAAGGGTCTATGCTCAGCTTTATGGAAACGCTCTTGCCTGA
AA sequence Show only first row Show all	>Lus10023961 pacid=23160768 polypeptide=Lus10023961 locus=Lus10023961.g ID=Lus10023961.BGIv1.0 annot-version=v1.0 MEAAEGSRKSMDSKFRALGSSRWLVFVCSMWLQSCAGIGYMFGSISPVIKTSMGYNQKQLALLGVAKDLGDSIGFVPGSLIELFPTWVLLLIGALQNFLG YGFVWLIVTQRLPPLPLWAVSSNDFVFLFQIYPSPANVVGILKGFAGLSGAILTQVYAMINSPNQSSLIFMVAVGPTMVAISLMFLVRPVEDNKQSEDSS NSFSFVYGVCILLAAYLLGILIVNDVVALKKKVDLSQNLVTLLTLVLLLIVLAPVLVPLKLVFFSEPIPTIAEHLLSKQVAATRHPPERLGSFVLSETED EDSVSSTSERNKRMAHLQAKLYQAAAEGAVRRKGNPRRGEDFTLMQALVKADFLLIWFSLVLAAGSGLTVIDNLGQICQSLGYDDANIYVSMMSIWNFLG RVAGGYFSEVIVRKFAYPRVVAMAAVEFVMALGLFYSAMGWPGQIYVVSIVIGLTYGANWAIVPAAVSELFGLKSFGALYNFLNLSTPAGSLVFSGVIAS RIYDYYAEQQQAGQNGQTLKCMGSICFSLTFGIMGCLCILAMVLSMIVVRRTKRVYAQLYGNALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14120			Major facilitator superfamily ...		Lus10023961 [exp]	0	1
AT2G38780			unknown protein		Lus10019776 [exp]	2.4	0.8947
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	4.0	0.8736
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	5.2	0.8699
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040007 [exp]	11.0	0.8482
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	12.6	0.8390
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	13.0	0.8559
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	14.1	0.8380
AT1G64355			unknown protein		Lus10032371 [exp]	14.9	0.8378
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	17.4	0.8659
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	19.0	0.8308

Compare expression of checked genes

Lus10023961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.