Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35210 154 / 4e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 154 / 8e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 146 / 7e-43 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 142 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 72 / 2e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 69 / 1e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 62 / 3e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 55 / 1e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 54 / 3e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 46 / 7e-06 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023960 [exp] 354 / 2e-124 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 344 / 1e-120 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 340 / 5e-119 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 335 / 5e-117 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 335 / 5e-117 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 333 / 2e-116 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 331 / 3e-115 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 331 / 3e-115 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 331 / 3e-115 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 167 / 3e-50 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 164 / 1e-49 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 159 / 2e-47 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 150 / 3e-44 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 150 / 4e-44 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 148 / 2e-43 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 147 / 5e-43 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 146 / 1e-42 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 121 / 6e-33 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248975 [exp] 115 / 1e-30 AT2G17080 164 / 2e-49 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023962 pacid=23160725 polypeptide=Lus10023962 locus=Lus10023962.g ID=Lus10023962.BGIv1.0 annot-version=v1.0 ATGGCAGCTACCACCTTCCACTCCCGATCCAACAGTTTCCCATCAAGGTCTCACCCTCTAGTTTCGGAGTTCGACGAGCAACTTTGCAGGTTGACACAAT CTCAAGCTGCCTCCACATCATCATCATCCATAAGCAACAAGCTTTATGGCCTTCAAGATGTTTATGACTGTGTTGACAAGTTGATTCAACTCCCATCAAC TCAGCAAGCCATGATCCATGACCAGAATGAGCTATTAGATGGATCTCTGAGACTCTTGGATCTATGCAACACAGCCAAGGATACCTTATCCCAAATGAAA GAGTCGGTTTCTGAACTTCAATCCGCTATTCGTAGAAGGCAAGGAGATATGGTAGCAGAAACCAAGAGATATCTCAACTCAAGGAAGATTGTGAAGAAAG CAATTCAAAAGGCCTTCAAGGGTTATGAAACCAAGAAATCAGAGACGGTTACCATGTTGAAAGAATCTGAGTCCATTGTTGTGGAAATTTTGGGGAGCTT GTTGTCTTTCATCTCTCAATCGAACTCCAAGTCAAGCAACTGGTCTTTGGTTTCCAAGCTGATTGCAGCTAAGAAGAATGAAGTTGCAGCATCAGAAAAC GAATTCGCCGAAGTGGATGTCTGTTTGAAGACGAGAAAATCCAGTGAGGAAATCCAAACCCATTTGAAGAACTTGCAGCCATGCATTCAAGATCTTGAAG AAGGAGTTGAATCCCTCTTTAGGTGCTTGATCAAAACAAGAGCCTCCGTTCTCAACATCTTGTAA
AA sequence Show only first row Show all	>Lus10023962 pacid=23160725 polypeptide=Lus10023962 locus=Lus10023962.g ID=Lus10023962.BGIv1.0 annot-version=v1.0 MAATTFHSRSNSFPSRSHPLVSEFDEQLCRLTQSQAASTSSSSISNKLYGLQDVYDCVDKLIQLPSTQQAMIHDQNELLDGSLRLLDLCNTAKDTLSQMK ESVSELQSAIRRRQGDMVAETKRYLNSRKIVKKAIQKAFKGYETKKSETVTMLKESESIVVEILGSLLSFISQSNSKSSNWSLVSKLIAAKKNEVAASEN EFAEVDVCLKTRKSSEEIQTHLKNLQPCIQDLEEGVESLFRCLIKTRASVLNIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	0	1
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	2.0	0.8327
AT3G14760			unknown protein		Lus10042496 [exp]	2.2	0.8258
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	2.4	0.8117
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	3.2	0.8355
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	4.0	0.8418
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	6.3	0.7517
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	6.6	0.7490
AT5G21050			unknown protein		Lus10019547 [exp]	6.7	0.7998
AT5G11630			unknown protein		Lus10002035 [exp]	7.6	0.7392
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	10.6	0.8027

Compare expression of checked genes

Lus10023962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.