Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 110 / 1e-30 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 107 / 1e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 106 / 6e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 106 / 6e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 56 / 4e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 56 / 4e-10 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 54 / 5e-09 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 50 / 9e-08 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 43 / 2e-05 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76240 42 / 5e-05 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023962 [exp] 206 / 4e-68 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014448 [exp] 202 / 5e-67 AT2G17080 189 / 4e-60 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 203 / 1e-66 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 200 / 8e-66 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025125 [exp] 198 / 5e-65 AT2G17080 219 / 4e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 198 / 8e-65 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 194 / 4e-63 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025121 [exp] 191 / 5e-63 AT2G17080 147 / 6e-44 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025122 [exp] 192 / 1e-62 AT4G35210 214 / 3e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 117 / 1e-32 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 113 / 3e-31 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 108 / 9e-30 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 108 / 9e-30 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 106 / 8e-29 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 106 / 9e-29 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 101 / 1e-26 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 100 / 2e-26 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012400 [exp] 99 / 6e-26 AT2G17080 143 / 2e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 98 / 2e-25 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023963 pacid=23160805 polypeptide=Lus10023963 locus=Lus10023963.g ID=Lus10023963.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACTCTAGATCCAACAGTTTTCCATCAAGGTCTCACCCTCTAGTTTCGGAGCTCGACGAGAAACTTTGCAGGCTGAGACAAT CTCAAGCTGCCTCCACATCATCATCATCCATAAGCAACAGGCTTAATGGCCTTAAGGATGTGTATGATTGTGTTGACAAGTTGATTCAACTCCCATCAAC TCAACAAGCCTTGATCCATGACCAGAATGAGCTATTAGATGGATCTCTAAGACTCTTGGATCTATGCAACACAGCCAAGGATGTCTTGTCCCAAATGAAA GAGTCAGTTTCTGAACTCCAATCCGCTATTCAGAGAAGACAGGGCGATCTGGCAGCAGAAACCAAGAGATACCTCAACTCCAGGAAGACTGTGAATAAAG CAATCCGAAAGGCCTTCTAG
AA sequence Show only first row Show all	>Lus10023963 pacid=23160805 polypeptide=Lus10023963 locus=Lus10023963.g ID=Lus10023963.BGIv1.0 annot-version=v1.0 MAATTFHSRSNSFPSRSHPLVSELDEKLCRLRQSQAASTSSSSISNRLNGLKDVYDCVDKLIQLPSTQQALIHDQNELLDGSLRLLDLCNTAKDVLSQMK ESVSELQSAIQRRQGDLAAETKRYLNSRKTVNKAIRKAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023963 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10038057 [exp]	2.8	0.9593
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	4.9	0.9515
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	6.0	0.9452
AT2G17080			Arabidopsis protein of unknown...		Lus10025126 [exp]	6.5	0.9512
AT5G14920			Gibberellin-regulated family p...		Lus10032168 [exp]	7.1	0.9465
AT3G24750			unknown protein		Lus10025939 [exp]	9.6	0.9481
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	11.0	0.9321
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	11.7	0.9414
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	12.0	0.9361
AT2G17080			Arabidopsis protein of unknown...		Lus10014450 [exp]	12.4	0.9406

Compare expression of checked genes

Lus10023963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.