Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35200 201 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 200 / 1e-63 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 197 / 1e-62 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 192 / 8e-61 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 101 / 3e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 96 / 3e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 88 / 2e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 76 / 5e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 77 / 8e-16 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 64 / 9e-12 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023952 [exp] 424 / 7e-152 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 392 / 3e-139 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 385 / 2e-136 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 381 / 7e-135 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 379 / 4e-134 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 378 / 1e-133 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 374 / 2e-132 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 371 / 6e-131 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 370 / 1e-130 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182700 [exp] 214 / 6e-69 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 212 / 1e-67 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 211 / 2e-67 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 209 / 6e-67 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 204 / 4e-65 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 202 / 3e-64 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 186 / 6e-58 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 181 / 7e-56 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 164 / 2e-49 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 159 / 2e-47 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023965 pacid=23160804 polypeptide=Lus10023965 locus=Lus10023965.g ID=Lus10023965.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCACCTTCCACGCTCGATCCAACAGTTTCCCATCAAGACCACACCCTCTAGTTTCAGAGCTCGACGAGCAACTTTGCAGATTGAGACAAT CTCAAGCTGCTTCCACTTCATCATCATCATCCATAAGCAACAAGCTTAATGGCCTTCAAGATGTTTATGACTGTGTTGACAAGTTGATTCAACTTCCATC AACCCAGCAAGCAATGATCTATGACCAAAATGAGCTATTGGATGGATCCCTCAGAGTCTTGGATCTATGCAACACAGCCAAGGATGCCTTGTCCCAAATG AAAGAGTCGGTTTCTGAACTTCAATCCGCCATTCGCAGAAGGCAAGGAGATCTAGTAGCAGAAACCAAAAGGTACCTCAACTCAAGGAAGACTGTGAAGA AAGCAATCCAAAAGGCCTTGAAAGCTATTGAAACCAAGAAATCTACCTCATCCAGCAACGTTGAGTCGATCCCCATGTTGAGAGAATCTGAGTTGATAGT TGTTGAGGTGTTGGAGAGCTTGTTGTGTTTCATTTGCCAATCAAACTGCAAGTCCAGCAGCTGGTCATTAGTTTCCAAGCTGATTACATCCAAGAAGACT CAAGTTTCTGCAAACACAAATGAATTTGCAGAGGTGGATGCCTCTTTGAAGACGAGCGAATCTAGCGAGGAAATCCAAGTTCATCTGAAGAACTTGCAGC CATGCATTCAAGATCTTGAAGAAGGTGTTGAGTCACTCTTTAGGTGTCTCATCAAAACAAGAGCATCCATTCTCAATGTTCACAATCTGTAA
AA sequence Show only first row Show all	>Lus10023965 pacid=23160804 polypeptide=Lus10023965 locus=Lus10023965.g ID=Lus10023965.BGIv1.0 annot-version=v1.0 MAATTFHARSNSFPSRPHPLVSELDEQLCRLRQSQAASTSSSSSISNKLNGLQDVYDCVDKLIQLPSTQQAMIYDQNELLDGSLRVLDLCNTAKDALSQM KESVSELQSAIRRRQGDLVAETKRYLNSRKTVKKAIQKALKAIETKKSTSSSNVESIPMLRESELIVVEVLESLLCFICQSNCKSSSWSLVSKLITSKKT QVSANTNEFAEVDASLKTSESSEEIQVHLKNLQPCIQDLEEGVESLFRCLIKTRASILNVHNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023964 [exp]	1.0	0.9795
AT2G17080			Arabidopsis protein of unknown...		Lus10025126 [exp]	3.2	0.9673
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	3.5	0.9615
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Lus10009745 [exp]	3.9	0.9644
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10027688 [exp]	4.2	0.9537
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	4.7	0.9516
AT3G24750			unknown protein		Lus10025939 [exp]	5.3	0.9657
AT2G17080			Arabidopsis protein of unknown...		Lus10014450 [exp]	5.3	0.9604
AT3G24750			unknown protein		Lus10038162 [exp]	6.5	0.9659
AT5G14920			Gibberellin-regulated family p...		Lus10032168 [exp]	6.9	0.9545

Compare expression of checked genes

Lus10023965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.