Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35190 350 / 3e-123 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G37210 307 / 1e-106 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT5G06300 306 / 3e-106 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G28305 301 / 2e-104 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT3G53450 300 / 6e-104 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G35990 281 / 3e-96 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G11950 256 / 2e-86 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 240 / 4e-80 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 136 / 2e-40 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 41 / 0.0004 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025117 [exp] 421 / 4e-151 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 356 / 2e-125 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 355 / 3e-125 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 307 / 2e-106 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 306 / 6e-106 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 305 / 2e-105 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 302 / 1e-104 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10023190 [exp] 290 / 6e-100 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 286 / 5e-98 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181800 [exp] 371 / 1e-131 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.009G141500 [exp] 363 / 2e-128 AT4G35190 357 / 2e-126 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.002G012500 [exp] 355 / 2e-125 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.005G248900 [exp] 345 / 1e-121 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 311 / 6e-108 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 308 / 7e-107 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G204800 [exp] 303 / 4e-105 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.009G010800 [exp] 300 / 8e-104 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 300 / 9e-104 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.016G072000 [exp] 283 / 3e-97 AT5G06300 323 / 1e-113 LONELY GUY 7, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10023967 pacid=23160786 polypeptide=Lus10023967 locus=Lus10023967.g ID=Lus10023967.BGIv1.0 annot-version=v1.0 ATGGAAGCAGTTGCAGAAACTTTCAACGATACTAGCAACAAAGGAGGAGTGATGAAATCAAAGTTCAAGAGGGTATGTGTGTTCTGCGGGAGTAGCACTG GGAAGAAGAACTGCTACAGAGATGCTGCCGTTGAGCTTGCTCAGGAGCTGATAGAGAAAAGATTGGATCTTGTGTATGGCGGAGGGAGTATTGGGCTAAT GGGTTTGGTTTCTCAAGCTGTCCATCGCGGTGGAGGCAATGTTCTTGGGATCATACCCAGGACCTTGATGAGCAAAGAGATTACTGGTGAACCAGTTGGT GAGGTGAAGGCTGTAGCCGACATGCACCAAAGGAAGGCAGAAATGGCCAGCCATTCTGATTGTTTCATTGCCCTACCAGGTGGATATGGAACATTGGAGG AGCTGTTGGAAGTCATCACTTGGGCTCAACTAGGAATCCACGACAAGCCTAGACCATATGATGATGATGACATTTGGAAGTCAAAACTTGTGAAGGTGGG TTTGCTGAATGTTGATGGATACTACAACTACCTCCTGACATTCATTGACAAAGCTGTGGATGATGGGTTCATCAAGCCATCCCAGCGCAACATCTTTGTC TCAGCACCAAACGCCAAAGAACTTGTCCAGAAGCTTGAGGAGTACGTGCCTGTGAACGATGGAGTCATTGTTAAGGCAATGTGGGAAGTTGAGCAGCAGC AACAACAGGTGGGTGGGATCAATGCTGCTCCTACCACTTTGCAGACTGAGGTAGCTCTATGA
AA sequence Show only first row Show all	>Lus10023967 pacid=23160786 polypeptide=Lus10023967 locus=Lus10023967.g ID=Lus10023967.BGIv1.0 annot-version=v1.0 MEAVAETFNDTSNKGGVMKSKFKRVCVFCGSSTGKKNCYRDAAVELAQELIEKRLDLVYGGGSIGLMGLVSQAVHRGGGNVLGIIPRTLMSKEITGEPVG EVKAVADMHQRKAEMASHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPRPYDDDDIWKSKLVKVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRNIFV SAPNAKELVQKLEEYVPVNDGVIVKAMWEVEQQQQQVGGINAAPTTLQTEVAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10023967 [exp]	0	1
AT4G13540			unknown protein		Lus10004393 [exp]	10.5	0.7973
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	15.4	0.8482
AT1G29270			unknown protein		Lus10007304 [exp]	15.7	0.7960
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10042759 [exp]	22.4	0.8206
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10009290 [exp]	28.3	0.7458
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	29.9	0.8114
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	33.5	0.7249
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	33.9	0.7365
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10012528 [exp]	35.6	0.8191
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10014143 [exp]	49.2	0.7975

Compare expression of checked genes

Lus10023967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.