Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29420 97 / 3e-26 SAUR-like auxin-responsive protein family (.1) AT1G29450 96 / 4e-26 SAUR-like auxin-responsive protein family (.1) AT1G29500 94 / 2e-25 SAUR-like auxin-responsive protein family (.1) AT1G29460 91 / 9e-24 SAUR-like auxin-responsive protein family (.1) AT5G27780 90 / 1e-23 SAUR-like auxin-responsive protein family (.1) AT1G29490 87 / 5e-23 SAUR-like auxin-responsive protein family (.1) AT1G29510 84 / 2e-21 SAUR68 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) AT1G29430 80 / 1e-19 SAUR-like auxin-responsive protein family (.1) AT1G76190 78 / 5e-19 SAUR-like auxin-responsive protein family (.1) AT1G29440 76 / 5e-18 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025114 [exp] 255 / 1e-88 AT1G29450 99 / 4e-27 SAUR-like auxin-responsive protein family (.1) Lus10023969 [exp] 85 / 3e-21 AT5G27780 96 / 1e-25 SAUR-like auxin-responsive protein family (.1) Lus10025115 [exp] 73 / 8e-17 AT1G29430 88 / 6e-23 SAUR-like auxin-responsive protein family (.1) Lus10034570 [exp] 70 / 4e-16 AT1G76190 122 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10003337 [exp] 74 / 6e-16 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10021825 [exp] 69 / 1e-15 AT1G76190 110 / 1e-32 SAUR-like auxin-responsive protein family (.1) Lus10007060 [exp] 66 / 3e-14 AT1G29430 71 / 2e-16 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 65 / 8e-14 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 62 / 1e-12 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140900 [exp] 111 / 7e-32 AT1G29510 139 / 3e-43 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.004G181400 [exp] 109 / 3e-31 AT1G29450 132 / 4e-40 SAUR-like auxin-responsive protein family (.1) Potri.009G141201 [exp] 108 / 9e-31 AT5G27780 132 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.017G043400 [exp] 103 / 1e-28 AT5G27780 141 / 8e-44 SAUR-like auxin-responsive protein family (.1) Potri.009G141150 [exp] 101 / 4e-28 AT1G29450 131 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.009G141000 [exp] 98 / 2e-26 AT1G29500 122 / 2e-36 SAUR-like auxin-responsive protein family (.1) Potri.017G043500 [exp] 92 / 2e-24 AT5G27780 120 / 1e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G141251 [exp] 88 / 5e-23 AT1G29430 93 / 7e-25 SAUR-like auxin-responsive protein family (.1) Potri.009G141100 [exp] 88 / 8e-23 AT1G29510 117 / 8e-35 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.002G064300 [exp] 84 / 3e-21 AT1G29510 109 / 2e-31 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10023970 pacid=23160675 polypeptide=Lus10023970 locus=Lus10023970.g ID=Lus10023970.BGIv1.0 annot-version=v1.0 ATGATAAACCCAAAGAAGCTAATCAAGATGGCCAAGAAGTGGCAGAGGAAGAGCATGAGCTTCAACTCCAGGACCAGCTACTCCCCCGTCGACGTCGACA TCACCAAGTTCAATTCCTCCCCTGTCGCCAACAGGGGACACTTCGTCGTCTACACCGCCGACTTCAAGCGCTTCGTTCTCCCTCTCTCTTACCTCGAACA CGCCGTCTTCCGGGAGCTCTTCCAGAGGTCCGAGGAAGAGTTCGGAGCTCCCGGCGACGGCCCCATCATGGTCCCCTGCGACTCTGTTTTCATGGAGAAT TCCGTCTGGCGGATCCAGAAGTTATCGTCGTCAACGGAGGCGGAGGTTCAGGGTGGTAAGGGGAGTTTACCGGCGACGACCGCGTCGTTCTCGCCCGTGG CCTCGTCGGTTCGAGGCGCCGGAGCTCGTGCTTTCAGATCGAGGAGTAGCTTGCTTGGTTGA
AA sequence Show only first row Show all	>Lus10023970 pacid=23160675 polypeptide=Lus10023970 locus=Lus10023970.g ID=Lus10023970.BGIv1.0 annot-version=v1.0 MINPKKLIKMAKKWQRKSMSFNSRTSYSPVDVDITKFNSSPVANRGHFVVYTADFKRFVLPLSYLEHAVFRELFQRSEEEFGAPGDGPIMVPCDSVFMEN SVWRIQKLSSSTEAEVQGGKGSLPATTASFSPVASSVRGAGARAFRSRSSLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29450			SAUR-like auxin-responsive pro...		Lus10023970 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10008892 [exp]	2.8	0.8131
AT5G24620			Pathogenesis-related thaumatin...		Lus10023896 [exp]	11.1	0.8414
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	18.4	0.8295
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	19.0	0.8299
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	22.1	0.8222
					Lus10000749 [exp]	27.0	0.7898
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	51.2	0.8023
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	55.0	0.7730
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	80.2	0.7893
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	83.6	0.7102

Compare expression of checked genes

Lus10023970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.