Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025106 [exp] 99 / 1e-26 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023972 pacid=23160826 polypeptide=Lus10023972 locus=Lus10023972.g ID=Lus10023972.BGIv1.0 annot-version=v1.0 ATGGCGGATCAGCATCATCAACACCAGGCATGTAGAAATGGAGACCAAGCAAAGGAGGAGGAGGAGGAGGACACAGCTGTAGGTGGGTTGTGTGGACTGC TCATCAAGAAAGTCGGTCATCATGGACATCATGATGATGATGAGCATGATCAGAAACAGCAGCAGCAGATTCCAACTGACCATCATCGTCGTGATGTGCC TGTGACGACGAATATTGAAGAACATGCTCCTCCTCATGGTCATCTTCATGATCAGGGGGAGGTCAAACATGGTGGAAATCCAAGCCTAGCTGATCGCCTG CACCTTTCTCATCCCACCGCGGATGAAGAGGTGAAACATGGTGGAAATCCAAGCCTGCAGCCTGATGCTGATCACCAGCTCCACCCTTCTCATGGCGGCT CGATTTTCAATGTAGAAAAATGGTGGCAAAAATCAATTGTCTCAGGCCCAATAGGCCCGGATTAA
AA sequence Show only first row Show all	>Lus10023972 pacid=23160826 polypeptide=Lus10023972 locus=Lus10023972.g ID=Lus10023972.BGIv1.0 annot-version=v1.0 MADQHHQHQACRNGDQAKEEEEEDTAVGGLCGLLIKKVGHHGHHDDDEHDQKQQQQIPTDHHRRDVPVTTNIEEHAPPHGHLHDQGEVKHGGNPSLADRL HLSHPTADEEVKHGGNPSLQPDADHQLHPSHGGSIFNVEKWWQKSIVSGPIGPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023972 [exp]	0	1
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	6.9	0.7457
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	8.2	0.7448
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	14.4	0.7411
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10004819 [exp]	18.5	0.6694
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	19.2	0.7371
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	24.0	0.6878
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	24.1	0.7137
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	26.5	0.7201
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	28.0	0.7184
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	31.6	0.6924

Compare expression of checked genes

Lus10023972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.