Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47450 371 / 1e-127 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT5G66055 54 / 9e-08 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT3G24530 53 / 2e-07 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT4G35450 51 / 5e-07 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT3G57130 50 / 2e-06 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT2G03430 49 / 2e-06 Ankyrin repeat family protein (.1) AT2G41370 49 / 4e-06 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT2G26210 47 / 5e-06 Ankyrin repeat family protein (.1.2.3) AT2G31820 44 / 0.0001 Ankyrin repeat family protein (.1) AT1G07710 44 / 0.0002 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025111 [exp] 120 / 1e-33 AT2G47450 55 / 4e-10 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Lus10001605 [exp] 67 / 1e-11 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10013859 [exp] 64 / 3e-11 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10026575 [exp] 62 / 1e-10 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1) Lus10003260 [exp] 48 / 8e-06 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10035413 [exp] 48 / 1e-05 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 48 / 1e-05 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10010667 [exp] 47 / 1e-05 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1) Lus10013115 [exp] 47 / 3e-05 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140500 [exp] 441 / 8e-155 AT2G47450 423 / 7e-148 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Potri.004G180766 [exp] 134 / 6e-39 AT2G47450 127 / 1e-36 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Potri.004G210100 [exp] 63 / 7e-11 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 63 / 7e-11 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.013G042300 [exp] 59 / 3e-09 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G185200 [exp] 59 / 3e-09 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.001G029600 [exp] 55 / 6e-08 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.016G040500 [exp] 49 / 3e-06 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.013G062000 [exp] 49 / 4e-06 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.004G064400 [exp] 48 / 6e-06 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10023973 pacid=23160659 polypeptide=Lus10023973 locus=Lus10023973.g ID=Lus10023973.BGIv1.0 annot-version=v1.0 ATGGATTCCCTCTTCATCAACCACTCCATTTCCCGCCTCAAGCTCTCTACAAACCTCCCTCTCCTTCCTAATCCCCTTTCCCAACCTCAATCTCTCTTCC TTCCCCACAACAAACCTCGCAACAACTTCACTCTCTCCGCAATCCAAGACCAGGATACCACCCGGAACCCGACCCAATCCGCCGACGACTATGGCGAAGT CGAGAAAATCATCGGGAGCAGAGCCCTGGAAGGCGGCGCCGGAATGGAGTATCTAATCCAATGGAAAGACGGCCACGACCCTTCCTGGGTCCCATCCGAT TACATCGCCAAAGACGTCCTCGCGGAATTCGAGTCCCCTTGGTGGACCGCCGCTAAGAAAGCCGATGAATCCGCCCTCCGATCCATCCTCGAATCGGACG AAGCCGACCGCGACGTAGACGCGGTCGACCCCGCCGGGAGGACTGCACTCCGCTTCGTCTCGGGGCTCGGGTCGGAGCAGTGCGTTAAACTGCTGGCCGA GTTCGGGTCGGATCTGGACCGCAAAGATAGAACCGGCGGGCTGACGGCGCTGCACATGGCGGCGGGTTACGTTAAACCGGGGGTGGTGAAAACGCTGCTG GACCTGGGTGCCGATCCGGAAGTGGAGGACAACAGGGGGCTGACGCCGTTAGGTTTAGCGAAGGAGATTCTACAGGTGACTCCGAAAGGGGATTTCTTGC AATTTGGGAGGAGGTTGGGGCTGGAGAGCGTGGTGAAGGTGTTGGAGGAAGGGATGTTTGAGTTCGCGGAGGTGGAGGAGATCGTGGAGAAGAGAGGGAA AGGGGAAAAGGTGGAGTATCTGGTACGGTGGAAGGATGACGGCGGCGATTGCGAGTGGGTAAACGGGAAGTTGATCGGAGAGGATTTGGTCAGAGATTAT GAGGCGGGATTGGAGTACGCGGTGGCGGAGGCTGTGGTGGGGAAGAGAGAGGTTGAAGTGGATGACGTGGAGGGGAAGAAGATGAAGAAGAAGGAGTACT TGGTGAAATGGACGGATATAGGTGATGCCACGTGGGAGCCTGAGGAGAATGTGGACCCGGATTTGGTGATGGAGTTCGAGGCGGGAAATGTTGAGCCCAT TATTAGTAGCGAGGGGTAG
AA sequence Show only first row Show all	>Lus10023973 pacid=23160659 polypeptide=Lus10023973 locus=Lus10023973.g ID=Lus10023973.BGIv1.0 annot-version=v1.0 MDSLFINHSISRLKLSTNLPLLPNPLSQPQSLFLPHNKPRNNFTLSAIQDQDTTRNPTQSADDYGEVEKIIGSRALEGGAGMEYLIQWKDGHDPSWVPSD YIAKDVLAEFESPWWTAAKKADESALRSILESDEADRDVDAVDPAGRTALRFVSGLGSEQCVKLLAEFGSDLDRKDRTGGLTALHMAAGYVKPGVVKTLL DLGADPEVEDNRGLTPLGLAKEILQVTPKGDFLQFGRRLGLESVVKVLEEGMFEFAEVEEIVEKRGKGEKVEYLVRWKDDGGDCEWVNGKLIGEDLVRDY EAGLEYAVAEAVVGKREVEVDDVEGKKMKKKEYLVKWTDIGDATWEPEENVDPDLVMEFEAGNVEPIISSEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	0	1
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	1.0	0.9156
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	2.8	0.9041
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	4.2	0.8975
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	7.1	0.9061
AT4G22560			unknown protein		Lus10028927 [exp]	7.3	0.9104
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10023322 [exp]	7.5	0.8971
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	7.7	0.8678
AT1G18060			unknown protein		Lus10041995 [exp]	7.9	0.8938
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031709 [exp]	10.4	0.8620
AT4G32020			unknown protein		Lus10005344 [exp]	10.7	0.9020

Compare expression of checked genes

Lus10023973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.