Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 212 / 1e-63 BGAL10 beta-galactosidase 10 (.1) AT2G28470 191 / 1e-55 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 186 / 1e-53 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT5G20710 185 / 2e-53 BGAL7 beta-galactosidase 7 (.1) AT4G36360 185 / 2e-53 BGAL3 beta-galactosidase 3 (.1.2) AT3G52840 184 / 2e-53 BGAL2 beta-galactosidase 2 (.1) AT5G56870 182 / 9e-53 BGAL4 beta-galactosidase 4 (.1) AT1G31740 181 / 6e-52 BGAL15 beta-galactosidase 15 (.1) AT4G26140 178 / 8e-52 BGAL12 beta-galactosidase 12 (.1.2) AT2G32810 174 / 1e-49 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025110 [exp] 246 / 7e-77 AT5G63810 851 / 0.0 beta-galactosidase 10 (.1) Lus10025108 [exp] 241 / 9e-73 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10022645 [exp] 229 / 2e-69 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 229 / 4e-69 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10023977 [exp] 229 / 3e-68 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10011237 [exp] 190 / 5e-55 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10015625 [exp] 188 / 2e-54 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10040557 [exp] 186 / 3e-54 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2) Lus10006009 [exp] 184 / 2e-53 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 225 / 3e-68 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.009G012400 [exp] 191 / 9e-56 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 190 / 4e-55 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 189 / 7e-55 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G025800 [exp] 185 / 1e-53 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.006G139100 [exp] 183 / 6e-53 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1) Potri.006G144500 [exp] 183 / 9e-53 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.004G159800 [exp] 182 / 1e-52 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.011G044300 [exp] 182 / 3e-52 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G018100 [exp] 180 / 1e-51 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10023974 pacid=23160816 polypeptide=Lus10023974 locus=Lus10023974.g ID=Lus10023974.BGIv1.0 annot-version=v1.0 ATGATCTCGTTCGTTCGGGATTCTGGTTTCCAATCTAAGGGCTGGTCCATGATTCTGCACTTCTTGACGCTTGAGCTTATGCGTGCTGAGGAATTGATGT TTAGCAGTGCGGAAAAACTGAAAAAGGGGCGTCCACAACACCATGCTTCACCTTCACTCCAAATCTTGTGTTCAGCTAATGACGACGAGGTGAGTTATGA CAGCCGGTCACTTATTATCCATGGCCGTCGCCACCTCATCATCTCTGCTTCTATTCATTGCCCTCGTAGCGATCCACAGTTCTATATGGAGAAATTCATG ACATACATCACGAACCTGATGAAGCAAGAGAAGCTTTTCGCCTCCCAAGGAGACAATGGTCCCATTATCTTGGCTCAGGCAAGTACAAAACAATCTTTTT CGGTGGAAAATGAATACCAATACTATGAACAGTTCTATGGAGTGGGGAAGAGATATGCTTACTGGGCTGCTAATATGGCTGTTTCTCAGCACACTGGTGT CCCTTGGATCATGTGTCAAGAGCCTGATGCTCCTGATCCTGTGATTGATACTTGCAACAGCTTTTACTGCGACGCGTTTCAACCAACTTCACCAAACAAA CCCAAGATTTGGACCGAGAACTGGACTGGATGGTTTCAATCATATGGACAACCAATCCCCCACAGGCCAGCACAAGATATCGCATTTTCTGTAGTTCGAT TCTTCCAGAAAGGCGGTAGTGTAGTGAACTATTACATGGTGAAAAGAACTTTCATTATGTTTCCTTCTTCACCTTCCTCCGTTTAA
AA sequence Show only first row Show all	>Lus10023974 pacid=23160816 polypeptide=Lus10023974 locus=Lus10023974.g ID=Lus10023974.BGIv1.0 annot-version=v1.0 MISFVRDSGFQSKGWSMILHFLTLELMRAEELMFSSAEKLKKGRPQHHASPSLQILCSANDDEVSYDSRSLIIHGRRHLIISASIHCPRSDPQFYMEKFM TYITNLMKQEKLFASQGDNGPIILAQASTKQSFSVENEYQYYEQFYGVGKRYAYWAANMAVSQHTGVPWIMCQEPDAPDPVIDTCNSFYCDAFQPTSPNK PKIWTENWTGWFQSYGQPIPHRPAQDIAFSVVRFFQKGGSVVNYYMVKRTFIMFPSSPSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023974 [exp]	0	1
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	4.9	0.8752
					Lus10021139 [exp]	6.9	0.8734
					Lus10026713 [exp]	9.6	0.8650
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	11.0	0.7981
					Lus10021851 [exp]	11.1	0.8605
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10027156 [exp]	11.4	0.7048
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	12.4	0.8605
					Lus10008791 [exp]	13.6	0.8605
					Lus10012440 [exp]	14.7	0.8605
					Lus10031183 [exp]	15.7	0.8557

Compare expression of checked genes

Lus10023974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.