Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03820 741 / 0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025109 [exp] 997 / 0 AT2G03820 763 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085700 [exp] 804 / 0 AT2G03820 694 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1) Potri.004G121500 [exp] 801 / 0 AT2G03820 710 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1) Potri.017G137500 [exp] 584 / 0 AT2G03820 464 / 2e-161 nonsense-mediated mRNA decay NMD3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04981 [flax] [poplar] NMD3 NMD3 family
Representative CDS sequence Show only first row Show all	>Lus10023975 pacid=23160769 polypeptide=Lus10023975 locus=Lus10023975.g ID=Lus10023975.BGIv1.0 annot-version=v1.0 ATGGCCGCTGAAGATGCAGGGATGTTCATGGTTCAACAGACCGTCGGCACGGTCCTGTGTTGCAAGTGCGGTATTCCGATGCAACCGAATGCCGCAAACA TGTGCGTGAGATGTCTTCGCTCCGAGATTGACATCACTGAAGGCTTGCAGAAGCATGTGATCATCATGTACTGCCCGGAGTGCGAATGCTACTTGCAGCC TCCCAAGACATGGATCAAGGCGCAGTGGGAGTCAAAGGAGCTGCTGACTTTCTGCGTAAAGAGGCTGAAGAACTTAAACAAGGTGAGGCTGATCCACGCT GAGTTCGTCTGGACCGAGCCTCACTCCAAACGTATAAAAGTGAGGTTGAGAGTTCAGAAGGAGGTTCTCAACGGTGCGGTCCTGGAACAAGCCTATGTGG TGGAGTATGTCCAGCAGGATCACATGTGCGAGGCTTGCTCGAGAGTGGCGGCCAATCCGGATCAGTGGGTTGCATCTGTGCAGCTTCGGCAGCATGTTTC TCATCGAAGGACTTTCTTTTATTTAGAGCAGCTGATTCTGAAGCACGATGCTGCTTCTCGCGCTATCAAGATCAAGCAGATGGACCAAGGTATCGATTTC TTCTTTGGAAACCGTAGCCACGCTGTGAAATTCTTGGAGTTTTTGGGGAAAGTTGTTCCGGTGAGGAGTCGGAATGATAAGCAGCTTGTTTCTCACGATG TTAAGAGCAGCACCTACAATTACAAGTTCACTTTCTCAGTTGAGATCAGTCCGATTTGTCGTGAGGATGTGATCTGCCTTCCTCAGAAAGTCTCCGTAAG TTTGGGAAACCTCGGCCCTCTCGTGATATGCACCAAGGTGACAAATAACATCGCGTTGCTGGATCCTTTCACTTTGAGGTACTGCTTTCTTGACTCGGAT CAGTATTGGAGGTACTCCTTCAAGTCCCTGCTAACCAGCAGGCAGCTGATTGAGTACATTGTGTTAGATATCGAAATCTCAAATCCTCCCGTGGAAGCAA GCATCGGTGGCACTAGCTATCTCATGGCTGACGTCCAGGTAGCTCGAGTATCTGATTTCGGCAAGAACGACAACATTTTCTACATAAAAACACATCTCGG CCATCTTCTGAACCCGGGGGATCACGCACTCGGGTACGACCTATATGCTGCTAATAGCAACGACAGCGAACTCGAGAAGTACAAGGGGCTTGTTCTTCCC GATGCGATCTTGATAAAGAAGAGCTACGAAGAGGTGAGGCAGAGGAAACGTGGGAAGCCAAGGGCATGGAAGCTCAAGTCGCTTAATATGGAAGTGGATG AGACTACTAGAGGTAGAGTGGATCAAGAGAAGGCGCACTCAGAGTACGAACGGTTCATCAGGGACCTGGAGGAGAACCCTGATCTTCGGTTCAACATATC CCTGTATCGGGACAAGGAATACCAGCCTTCGGAGATGGCCTCGGTTACTGACGGAGAAGAAGTGCCCTCGGTTCCGTTGGAAGAACTGCTTGCTGATCTT GAGTTGAATGATGATTATGAAGGTGGAGAAGAAGAAGAGGGCATGAGTGAATGA
AA sequence Show only first row Show all	>Lus10023975 pacid=23160769 polypeptide=Lus10023975 locus=Lus10023975.g ID=Lus10023975.BGIv1.0 annot-version=v1.0 MAAEDAGMFMVQQTVGTVLCCKCGIPMQPNAANMCVRCLRSEIDITEGLQKHVIIMYCPECECYLQPPKTWIKAQWESKELLTFCVKRLKNLNKVRLIHA EFVWTEPHSKRIKVRLRVQKEVLNGAVLEQAYVVEYVQQDHMCEACSRVAANPDQWVASVQLRQHVSHRRTFFYLEQLILKHDAASRAIKIKQMDQGIDF FFGNRSHAVKFLEFLGKVVPVRSRNDKQLVSHDVKSSTYNYKFTFSVEISPICREDVICLPQKVSVSLGNLGPLVICTKVTNNIALLDPFTLRYCFLDSD QYWRYSFKSLLTSRQLIEYIVLDIEISNPPVEASIGGTSYLMADVQVARVSDFGKNDNIFYIKTHLGHLLNPGDHALGYDLYAANSNDSELEKYKGLVLP DAILIKKSYEEVRQRKRGKPRAWKLKSLNMEVDETTRGRVDQEKAHSEYERFIRDLEENPDLRFNISLYRDKEYQPSEMASVTDGEEVPSVPLEELLADL ELNDDYEGGEEEEGMSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	0	1
AT1G18850			unknown protein		Lus10024247 [exp]	1.0	0.8733
AT5G41190			unknown protein		Lus10008488 [exp]	3.2	0.8197
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	3.5	0.7905
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	4.2	0.7946
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	7.4	0.7822
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	7.7	0.7133
AT5G22840			Protein kinase superfamily pro...		Lus10020515 [exp]	8.9	0.7352
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	17.3	0.7695
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	19.3	0.7291
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	19.7	0.6845

Compare expression of checked genes

Lus10023975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.