Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 439 / 7e-148 BGAL10 beta-galactosidase 10 (.1) AT4G36360 394 / 9e-129 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 366 / 2e-118 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 340 / 3e-108 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 304 / 2e-94 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT3G52840 301 / 2e-94 BGAL2 beta-galactosidase 2 (.1) AT1G45130 298 / 3e-93 BGAL5 beta-galactosidase 5 (.1) AT5G56870 294 / 6e-92 BGAL4 beta-galactosidase 4 (.1) AT4G26140 289 / 7e-90 BGAL12 beta-galactosidase 12 (.1.2) AT5G20710 289 / 4e-89 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023977 [exp] 961 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10025108 [exp] 893 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10022645 [exp] 688 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 684 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10041798 [exp] 392 / 2e-128 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025110 [exp] 384 / 2e-126 AT5G63810 851 / 0.0 beta-galactosidase 10 (.1) Lus10015625 [exp] 378 / 1e-122 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 377 / 2e-122 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 365 / 1e-117 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 590 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.005G232600 [exp] 389 / 3e-127 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G144500 [exp] 387 / 2e-126 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 381 / 4e-124 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 380 / 1e-123 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 374 / 2e-121 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 345 / 2e-110 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 316 / 4e-99 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 312 / 2e-97 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.018G062800 [exp] 300 / 4e-93 AT5G20710 914 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain
Representative CDS sequence Show only first row Show all	>Lus10023976 pacid=23160814 polypeptide=Lus10023976 locus=Lus10023976.g ID=Lus10023976.BGIv1.0 annot-version=v1.0 ATGACCGTCACATTCCGAAATTCATCATACCACTTGCCGGCATGGTCAGTCAGTATCTTATCGGACTGCAGGAATGAAATTTTTAACACGGCGAAGGTAA CGTCTCAGGCCTCCGTGGTTGAAATGGTTCCTGAGGGCATGAGGCCATCAATAAAGTCATCGGAGATAGACTCAACAACTCTGAACTGGGAAGTGTTTGT GGAAAAAGCAGGCATTTGGGGAGAAGCTGATTTTGTCAAAAACAGCTTGGAGGATCACATTAATGCCACAAAAGATGCTAGTGACTATCTATGGTACACA ACAAGCATTACTGTTGGTGATGATGAACAATTCTTAAAACAAGGACAACCTCCAGTTCTCACGATTGCCTCAAAGGGTCATGCTCTCCATGTTTATGTCA ATGGGCAACTTCAAGGTAGCGCGTTTGGAAATGGCGCATTTGCTTCTTTCGAATATAAGCAAACCATAACTCTGAAGGCAGGGAATAACTTAATCTCTCT GCTCAGCATGACTGTTGGCCTAACGTCTACTGGTCCTCGGTACGAATGGACCCCAGCAGGACTCACTAGTGTCAAGATCGAGGGGCTCAATGGTGGGACA ATGGACTTATCCACTTACGAATGGACTTATAAGATTGGTATGCAAGGAGTAAATCTTGCTATACATTCACCAAGTGGTATAAACAGCGTGAACTGGACAC CAACTCCAATTGTGCCAAAAATGCAGCCTTTGACATGGTACAAGACAACTGTGGATCCACCGACCGGAGACGAACCCATAGGACTTGATATGCTCAACAC GGGGAAGGGTCTTGCTTCGTTGAATGGAGAAGAAATTGGCAGATACTGGCTCAGGGAAAGCCCTAAAGACGACAGATGCACTGAAGAATGTGATTACAGG GGCAAGTTGGCTCTAACAAGTGGTCCAATGGCCGAGTTTATGGTGCAAAAATATTCTACAGGTTGTGGGGAACCCACACAGAGATGGTACCACATTCCTC GATCATGGTTCAAGCCATCCGGAAACATTCTCGTGATCTTGGAAGAGATAGGCGGTGACCCAACATTGATCAAGTTCTCGAAACGAAGAATCTCCGGAGT CTGCGCTTCCATCGGAGAGGATTACCCCTCCGGAACTCTTCATCTACAATGCCCTAAAGATGCCAATATATCGAGCGTGAAATTCGCTAGCTTCGGCACT CCTACTGGAACGTGTGGATCATACAAGGAAGGGGACTGCCACGATCCTAACTCCATTTTCGCTGTCGAAAAGGAATGTTTGAACAGAAACGAATGCAGCA TCCAAGTATCAGAAGTGAAGTTCAGCATGGGGAATTGCCGTGCAGATTCGACTGCGAGGAAAAGGCTTGCTGTGGAGGTAGTCTGTGGCAGCTCATGA
AA sequence Show only first row Show all	>Lus10023976 pacid=23160814 polypeptide=Lus10023976 locus=Lus10023976.g ID=Lus10023976.BGIv1.0 annot-version=v1.0 MTVTFRNSSYHLPAWSVSILSDCRNEIFNTAKVTSQASVVEMVPEGMRPSIKSSEIDSTTLNWEVFVEKAGIWGEADFVKNSLEDHINATKDASDYLWYT TSITVGDDEQFLKQGQPPVLTIASKGHALHVYVNGQLQGSAFGNGAFASFEYKQTITLKAGNNLISLLSMTVGLTSTGPRYEWTPAGLTSVKIEGLNGGT MDLSTYEWTYKIGMQGVNLAIHSPSGINSVNWTPTPIVPKMQPLTWYKTTVDPPTGDEPIGLDMLNTGKGLASLNGEEIGRYWLRESPKDDRCTEECDYR GKLALTSGPMAEFMVQKYSTGCGEPTQRWYHIPRSWFKPSGNILVILEEIGGDPTLIKFSKRRISGVCASIGEDYPSGTLHLQCPKDANISSVKFASFGT PTGTCGSYKEGDCHDPNSIFAVEKECLNRNECSIQVSEVKFSMGNCRADSTARKRLAVEVVCGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023976 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	6.1	0.6175
					Lus10013963 [exp]	22.3	0.5714
AT5G16740			Transmembrane amino acid trans...		Lus10035738 [exp]	25.8	0.5634
AT4G23350			Protein of Unknown Function (D...		Lus10042273 [exp]	29.7	0.5633
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	64.5	0.5516
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10012766 [exp]	90.1	0.5146
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10000678 [exp]	93.1	0.5258
AT5G17680			disease resistance protein (TI...		Lus10028043 [exp]	97.7	0.5121
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	102.6	0.5225
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	104.2	0.4616

Compare expression of checked genes

Lus10023976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.