Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 68 / 2e-14 unknown protein AT1G15790 59 / 9e-12 unknown protein AT2G10440 41 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 82 / 5e-19 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 77 / 1e-17 AT1G15780 587 / 0.0 unknown protein Lus10015321 [exp] 52 / 1e-08 AT1G15780 78 / 5e-16 unknown protein Lus10015322 [exp] 50 / 4e-08 AT1G15780 164 / 1e-41 unknown protein Lus10025448 [exp] 47 / 4e-07 AT1G15780 80 / 9e-18 unknown protein Lus10012027 [exp] 40 / 0.0002 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204900 [exp] 77 / 2e-17 AT1G15780 575 / 0.0 unknown protein Potri.003G012400 [exp] 76 / 5e-17 AT1G15780 557 / 2e-175 unknown protein Potri.003G025200 [exp] 71 / 5e-17 AT1G15780 139 / 2e-39 unknown protein Potri.003G028089 [exp] 76 / 6e-17 AT1G15780 223 / 5e-60 unknown protein Potri.003G026510 [exp] 67 / 2e-15 AT1G15780 160 / 2e-46 unknown protein Potri.003G014156 [exp] 53 / 2e-10 AT1G15780 110 / 4e-30 unknown protein Potri.003G028245 [exp] 53 / 2e-10 AT1G15780 110 / 4e-30 unknown protein Potri.006G031200 [exp] 46 / 1e-06 AT1G15780 242 / 1e-65 unknown protein Potri.016G028200 [exp] 40 / 0.0001 AT1G15780 252 / 4e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023978 pacid=23160821 polypeptide=Lus10023978 locus=Lus10023978.g ID=Lus10023978.BGIv1.0 annot-version=v1.0 ATGGCTGCGAATAGTACGACTCCTGCTGCTCCTGCTCCTGCTGCGAATGGGGGTGACTGGAGAGCTACATTGACGGCCGAAACGAGACAAAAAGTCGTGA ACATAATATCCTTGATTCTGTGCAGATTTGAAATATCGAGGAGGGCTCTACCATTTACTTGTGAAGAGGGACTGCACGCACTGATGAGAGTTGCTCTAAT ATTTGAGCTTAAGATGTATACTGTTGCCGCTGATCGGGCTGAGTATCGGCGGAAGATAGAACGGAAGATGTTCGGAGTGGACAGCGACGCAGGGAACTGT TTAGCCGATGTCTGGCCGGCTGACTCAGCAGACAACGCCGCCGGTGAACCCGCTACTAGTTCTGTTACCCCTTAG
AA sequence Show only first row Show all	>Lus10023978 pacid=23160821 polypeptide=Lus10023978 locus=Lus10023978.g ID=Lus10023978.BGIv1.0 annot-version=v1.0 MAANSTTPAAPAPAANGGDWRATLTAETRQKVVNIISLILCRFEISRRALPFTCEEGLHALMRVALIFELKMYTVAADRAEYRRKIERKMFGVDSDAGNC LADVWPADSADNAAGEPATSSVTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10023978 [exp]	0	1
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	3.2	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	3.3	1.0000
					Lus10003763 [exp]	3.9	1.0000
					Lus10006079 [exp]	5.7	1.0000
					Lus10010414 [exp]	6.7	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	7.3	1.0000
					Lus10010663 [exp]	7.5	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	8.0	1.0000
					Lus10034359 [exp]	8.7	1.0000
					Lus10014229 [exp]	9.4	1.0000

Compare expression of checked genes

Lus10023978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.