Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 226 / 5e-71 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71250 214 / 2e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 209 / 1e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 202 / 9e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 202 / 9e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 197 / 3e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 197 / 6e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 196 / 1e-59 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G04290 196 / 2e-59 ATLTL1, LTL1 Li-tolerant lipase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025105 [exp] 734 / 0 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 388 / 3e-134 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 387 / 1e-133 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 271 / 2e-88 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10021540 [exp] 271 / 4e-88 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 265 / 5e-86 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 258 / 2e-83 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 230 / 2e-72 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 219 / 2e-68 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 393 / 3e-136 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 300 / 3e-99 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 298 / 3e-99 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 224 / 2e-70 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 209 / 2e-64 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024600 [exp] 205 / 9e-63 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 205 / 1e-62 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G086700 [exp] 203 / 4e-62 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G051000 [exp] 202 / 8e-62 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024400 [exp] 201 / 2e-61 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10023979 pacid=23160682 polypeptide=Lus10023979 locus=Lus10023979.g ID=Lus10023979.BGIv1.0 annot-version=v1.0 ATGGAGAACACAAAGAAAGCCTTTCTACTGTCACTTGTTGGCATTGCTGTAATGATGTTGATGAGCACAGCAGAAGCAGAAGTGCCTGCTGTGTTTGTGT TGGGAGACTCAACTGTTGATGTTGGAACCAACAATTTCTTGCCTGGAAGCATCGACAGAGCTGACTTCCCTCACAATGGCATTGACTTCCCTGCTTCCAA AGCCACTGGAAGGTTTGGCAATGGCCTCAACATTGCTGACTTCCTTGCTAAGCAGCTTGGACTTGAACTGAGTCCACCGCCTTTCTTCATGCTTGGGAAC GGTACATCTCCTTTGAAGAACACTACTTTCAGAGGAGCGAACTTCGCCTCTGGGGGAGCTGGAATTCTTGACACCACTGGTTTGAGCCCGGATGGGGTAA AGCAAGTTGTCCCGTTGAGTGAGCAGGTTGAACAGCTGAGTTCCATCTCCTCCAGACTTGCCAGCTTTAAAGGTGCTGAAGCTGCAGCAGATTACCTCGC AACTTCAATGTTCATCATCAGCATCGGTAGCAATGACATCTTCCACTATTACCGCTTCAATAGCAGCTCTACAAAGGACCAGTTCCTGACTAACCTAACA GCCACATACGAGCAACATTTGAGGACAATGATTGGTTTTGGAGTGAAGAAGATTGCGATCATTGCGGTCGGACCAATCGGGTGCTGCCCATCTCAGAGGA CTTTCAATCAGACGTTAGGCTGCTTGGGGGCGATGAATGACATGGCAACTTCTTTCAACTCAAGATTACAATTCCTGATGAGCAAACTCAGTTCCGAATA CGATGGGATGAAATACTCGGTCGGGGATGCTTATTCCATGACCATGTCTTTGATCCAGAACCCTGCATCATACGGATTCAAGGAGGTCAGTAGAGCATGT TGTGGGACCGGGACGCTGAATGCCGAATTCTTCTGTACACCAGACGCCAACGTTTGCTCGAACAGGGAAGAGACACTGTTCTGGGACATGTTCCACCCAA CCCAGGCTGCATCAAAGCTTGCTGCTTCAACACTCTACAATGGCGGCAAGCCATTTGTGGCCCCGATCAACTTCAAGGAGTTAGCAAACGCCTTCTAA
AA sequence Show only first row Show all	>Lus10023979 pacid=23160682 polypeptide=Lus10023979 locus=Lus10023979.g ID=Lus10023979.BGIv1.0 annot-version=v1.0 MENTKKAFLLSLVGIAVMMLMSTAEAEVPAVFVLGDSTVDVGTNNFLPGSIDRADFPHNGIDFPASKATGRFGNGLNIADFLAKQLGLELSPPPFFMLGN GTSPLKNTTFRGANFASGGAGILDTTGLSPDGVKQVVPLSEQVEQLSSISSRLASFKGAEAAADYLATSMFIISIGSNDIFHYYRFNSSSTKDQFLTNLT ATYEQHLRTMIGFGVKKIAIIAVGPIGCCPSQRTFNQTLGCLGAMNDMATSFNSRLQFLMSKLSSEYDGMKYSVGDAYSMTMSLIQNPASYGFKEVSRAC CGTGTLNAEFFCTPDANVCSNREETLFWDMFHPTQAASKLAASTLYNGGKPFVAPINFKELANAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023979 [exp]	0	1
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	11.7	0.7426
					Lus10014936 [exp]	25.1	0.7628
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	28.5	0.7642
AT1G47670			Transmembrane amino acid trans...		Lus10023971 [exp]	30.0	0.7446
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	37.3	0.7584
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	44.9	0.7547
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	60.3	0.7540
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	78.6	0.7433
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	87.6	0.7155
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	92.3	0.7395

Compare expression of checked genes

Lus10023979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.