Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 184 / 7e-55 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 182 / 6e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G50400 181 / 2e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 177 / 4e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 176 / 8e-52 SGNH hydrolase-type esterase superfamily protein (.1) AT5G18430 173 / 1e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 171 / 8e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 169 / 4e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 168 / 1e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025104 [exp] 735 / 0 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 391 / 2e-135 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 387 / 8e-134 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 260 / 5e-84 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 258 / 2e-83 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 258 / 3e-83 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10021540 [exp] 237 / 4e-75 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 190 / 6e-57 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 186 / 2e-55 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 402 / 5e-140 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 298 / 1e-98 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 261 / 1e-84 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 188 / 2e-56 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 183 / 1e-54 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.002G253400 [exp] 181 / 2e-53 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 181 / 3e-53 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051000 [exp] 178 / 2e-52 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.008G104600 [exp] 176 / 2e-51 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 176 / 2e-51 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10023980 pacid=23160701 polypeptide=Lus10023980 locus=Lus10023980.g ID=Lus10023980.BGIv1.0 annot-version=v1.0 ATGGATAACCTTAAAGTTCTTGTCTTGTTTCTGGTAGGGATAGGTGCATTTGGTATCAACTCGGCATATGAAACAGCTTCATCTCCTCCTGTGGTTTTCA TCTTAGGGGACTCGACAGTCGATGTTGGAACCAACAACTTCTTGCCTGAAAGCACTTCCAGGGCTGACTTCCCTCACAATGGGATTGACTTCCCTAACTC CAGGCCAACGGGAAGGTTCAGCAACGGTCTCAACAGTGCTGATCAGCTAGCACTACTGATGGGACACAAAAGAAGCCCAGCGCCTTTCTTTCTTCTCAGG AGGAAAACAAGAGGCTTCACTAAGAGCAAGTTCAGAGGAGTCAGCTTTGCTTCAGGGGGTTCGGGAATTTTTTACCGCACCGGGCAAATCCCGACTCGGG GAAATGTATCTATTGGCGGAAAGAATGCTGTTCCTTTGTCCGAGCAAATACAGCAACTTTCGTTCGTCTACAATAAGATTCTATCAGTCAGGAAACTAAG AGGAACCAGAGATCTCTTTGCCAAATCCCTATTCTTCATCAGCATTGGCAGCAATGATCTCTTTGAGCAATACCATTCCAAAACCAAGCAACCAAAGGAG ATTTTCATTGCTTCTCTGGTCCAAGCATACGGGATACACATGAGGAAATTGCTTAGACTTGGAGCGAGGAAGATCGGAATCGTTACAGTTGCACCAATCG GCTGTTGTCCATCTCAAAGAATCTTCAATCATACTTTAGGATGTCTGGATGAGCTGAATGATCTTGCATTGGCCTTCCATTCTCAAGTTACTCAGCTCAT GTTTAACCTTAGTTTCGAATATCGTGACATGAAGTATTCGATTGGCAATGCATTTTTAATGACCATGAACGTAATCAACAACCCTAACCTAGTCGGATTA AAGGATGTGACAGGGGCATGTTGTGGACAAGGAGCACTATTGAATGCGCAAGGACCCTGCACTCCAACTGCTAATCTTTGCCCAAGGCGCGACGAGTTCT TGTTCTGGGATTTGTTTCATCCTACACAGAAAGCTGCAAAACTGGCTGCTGACACTTTATACACTGGTCCCACCCAGTTCGTCGCGCCGATTAACTTCAA GCAGTTGGCTGAGGCTTAA
AA sequence Show only first row Show all	>Lus10023980 pacid=23160701 polypeptide=Lus10023980 locus=Lus10023980.g ID=Lus10023980.BGIv1.0 annot-version=v1.0 MDNLKVLVLFLVGIGAFGINSAYETASSPPVVFILGDSTVDVGTNNFLPESTSRADFPHNGIDFPNSRPTGRFSNGLNSADQLALLMGHKRSPAPFFLLR RKTRGFTKSKFRGVSFASGGSGIFYRTGQIPTRGNVSIGGKNAVPLSEQIQQLSFVYNKILSVRKLRGTRDLFAKSLFFISIGSNDLFEQYHSKTKQPKE IFIASLVQAYGIHMRKLLRLGARKIGIVTVAPIGCCPSQRIFNHTLGCLDELNDLALAFHSQVTQLMFNLSFEYRDMKYSIGNAFLMTMNVINNPNLVGL KDVTGACCGQGALLNAQGPCTPTANLCPRRDEFLFWDLFHPTQKAAKLAADTLYTGPTQFVAPINFKQLAEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023980 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Lus10001564 [exp]	4.7	0.8543
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	5.3	0.8672
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	8.0	0.8418
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10043383 [exp]	8.3	0.7548
AT3G27210			unknown protein		Lus10035217 [exp]	15.9	0.8238
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	26.2	0.8252
AT1G76590			PLATZ transcription factor fam...		Lus10014396 [exp]	26.5	0.8103
					Lus10022042 [exp]	28.6	0.8013
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	28.6	0.8421
					Lus10014008 [exp]	32.5	0.7846

Compare expression of checked genes

Lus10023980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.